Gene detail information of Glyur000368s00021709 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67400.1 | 1.00E-92 | ELMO/CED-12 family protein |
| NR | XP_007044043.1 | 4.21E-144 | ELMO/CED-12 family protein isoform 2 [Theobroma cacao] |
| trEMBL | tr|A0A061E4B7|A0A061E4B7_THECC | 2.00E-144 | ELMO/CED-12 family protein isoform 2 {ECO:0000313|EMBL:EOX99874.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 83247 | 88275 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021709.1 | PF04727.8 | ELMO_CED12 | 115 | 269 | 2.20E-45 |
| Glyur000368s00021709.2 | PF04727.8 | ELMO_CED12 | 115 | 173 | 3.60E-15 |
| Glyur000368s00021709.2 | PF04727.8 | ELMO_CED12 | 175 | 246 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.347 |
| SRR1783600 | control | 14.692 |
| SRR1783602 | moderate drought stress | 14.278 |
| SRR1811619 | moderate drought stress | 14.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.079 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 82.200 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 79.753 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.476 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.844 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.270 |
| SRR2868004 | Drought Stress (root) | 36.357 |
| SRR2967015 | Control (root) | 50.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.866 |
| SRR9715740 | Leaf | 19.700 |
| SRR9715741 | Leaf | 19.070 |
| SRR9715739 | Root | 11.883 |
| SRR9715742 | Root | 17.926 |
| SRR9715743 | Root | 20.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.758 |
| SRR8749028 | MeJA induced 9h | 19.552 |
| SRR8749029 | MeJA induced 9h | 18.244 |
| SRR8749030 | Uninduced | 47.358 |
| SRR8749031 | Uninduced | 16.079 |
| SRR8749032 | Uninduced | 18.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.017 |
| SRR8400027 | Control - Root | 30.211 |