Gene detail information of Glyur000368s00021707


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67430.12.00E-82Ribosomal protein L22p/L17e family protein
NRXP_007044055.11.24E-127Ribosomal protein L22p/L17e family protein isoform 2 [Theobroma cacao]
COGYP_004616297.12.00E-2850S ribosomal protein L22 [Methanosalsum zhilinae DSM 4017]
Swissprottr|P51413|RL172_ARATH2.00E-11460S ribosomal protein L17-2
trEMBLtr|A0A061E6A4|A0A061E6A4_THECC5.00E-128Ribosomal protein L22p/L17e family protein isoform 2 {ECO:0000313|EMBL:EOX99886.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003686813769798-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015934  large ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000368s00021707.1PF00237.14Ribosomal_L22171534.50E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control425.841
SRR1783600control426.596
SRR1783602moderate drought stress332.502
SRR1811619moderate drought stress329.407

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain563.033
DRR006520Root Summer glycyrrhizin high producing strain556.072
DRR006521Root Winter glycyrrhizin high producing strain258.754
DRR006522Root Winter glycyrrhizin high producing strain251.515
DRR006523Root Summer glycyrrhizin low producing strain521.027
DRR006524Root Summer glycyrrhizin low producing strain515.402
DRR006525Leaf Summer glycyrrhizin high producing strain146.766
DRR006526Leaf Summer glycyrrhizin high producing strain145.755

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)472.129
SRR2868004Drought Stress (root)298.550
SRR2967015Control (root)307.528

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf194.080
SRR9715740Leaf181.232
SRR9715741Leaf167.906
SRR9715739Root382.530
SRR9715742Root320.773
SRR9715743Root305.132

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1002.386
SRR8749028MeJA induced 9h496.786
SRR8749029MeJA induced 9h756.853
SRR8749030Uninduced146.744
SRR8749031Uninduced70.770
SRR8749032Uninduced167.310

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root399.121
SRR8400027Control - Root345.993

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved