Gene detail

Gene detail information of Glyur000368s00021704.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67440.1	2.00E-118	Minichromosome maintenance (MCM2/3/5) family protein
NR	XP_004502304.1	1.46E-173	PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cicer arietinum]
COG	YP_001514796.1	4.00E-70	ribosome-associated GTPase [Acaryochloris marina MBIC11017]
trEMBL	tr\|G7JC10\|G7JC10_MEDTR	5.00E-171	Ribosome biogenesis GTPase RsgA, putative {ECO:0000313\|EMBL:AES72053.1}

Sequence

Transcript Sequence

>Glyur000368s00021704.1
ATGCGCGTCATCGTCCACTCTCTTCCCGAAGAACCTTCTGGAAGCTTCCGCGAGTCCCTCGGTGGGGTGGAGCTGCTGTGCGTGGTGAGGGCGCTGCTGAAGAAGATAAAGCGCAGAGTGATGGTTGGGGTTTTTTTTTTAGTAGGTTCCATCGATTGGGTGGACCGTAGAGGCATGATTGAAAACGTGTTTTTTTTTTATTCAGAGATACTTGACCCACCGGTTGCCAACGTGGACCATTTGCTCGTCCTTTTTTTTTTCGATCAACCCAGGCTTGAGCCCTTCACGCTTACTAGGTTTCTAGTGGAGGCTGAGTCCACTGGGATCCCTCTCACTCTTGCACTCAACAAGACCGAGCTTGTAGACAATGCAATCCCCATGTTTGTGATGGTGCAGAAGGGATTTGGCGGTGAGAAGCATACTACTCGCCATGTCACTTTGCTTTTTTTTTTTGGAGGGACCGCGGGTTCGTGGAAGGCTAGGTTACGCGACTGGGGCTATTTTTTTTTTTTTTGCAGTGTTGAATCTGGACATAACCTCGATCTTCTTGCGTTCAAATTGTTTTTTTTTACAACAGTGATCGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATTTTTTTTTTGGCAATCCCCGTATTTTAGGTAGCAAGTGGTTTGAGGACCAGCGATTTTTTTTTGTTTCGACAAGAAGCGGCAGAGGGAAGCATACGACTCGCCATGTCACTCTGCTTCCACTATCTGGAGGGGGTTATCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTTTTTTTTACAAAGCAATCTCTTGCACAAACTTTTCCTGAAATAAGGAAAATGCTTAGTGCCAATGAGTCTGCAAAGTGTTCATTTTTTTTTTTTTTGCATCTTGGTGAACCTGGTTGCATTGTGAAGGGTGACTGGGAAAGATATTTTTTTTTTTTTCAACTTCTTTATGAAATTAAAATCAGAGAGGAGTTCCAGTTAAGGACATTTGGAACTAAAAGAGAAGGCGATGTAAGGAGATATGGGTGTTCAGCAAGCAGAACCCCGAGGATTAACCAGTCAATTTTAGATGAAATGGATTTTTTTTTCGACAATATGCTTGATGAGGAAAATGATCCCATTTTAAGGGCTTTGAAGAATGAAAACTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00368	52879	57101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06949	rsgA, engC	EC:3.6.1.- 3.1.3.100	Thiamine metabolism	map00730

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000368s00021704.1	PF03193.11	DUF258	157	319	7.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.375
SRR1783600	control	3.662
SRR1783602	moderate drought stress	3.791
SRR1811619	moderate drought stress	4.157

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.393
DRR006520	Root Summer glycyrrhizin high producing strain	4.769
DRR006521	Root Winter glycyrrhizin high producing strain	3.487
DRR006522	Root Winter glycyrrhizin high producing strain	3.684
DRR006523	Root Summer glycyrrhizin low producing strain	2.099
DRR006524	Root Summer glycyrrhizin low producing strain	2.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.090
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.795

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.212
SRR2868004	Drought Stress (root)	1.916
SRR2967015	Control (root)	1.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.922
SRR9715740	Leaf	2.149
SRR9715741	Leaf	1.121
SRR9715739	Root	2.943
SRR9715742	Root	1.653
SRR9715743	Root	2.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.016
SRR8749028	MeJA induced 9h	0.733
SRR8749029	MeJA induced 9h	0.257
SRR8749030	Uninduced	0.099
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.985
SRR8400027	Control - Root	2.787