Gene detail information of Glyur000367s00029077 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18670.1 | 8.00E-39 | Ankyrin repeat family protein |
| NR | KHN40294.1 | 0 | Ankyrin repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9C7A2|Y3236_ARATH | 1.00E-09 | Ankyrin repeat-containing protein At3g12360 |
| trEMBL | tr|K7L1H4|K7L1H4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G16001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00367 | 128695 | 134613 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000367s00029077.1 | PF12796.2 | Ank_2 | 302 | 357 | 2.20E-06 |
| Glyur000367s00029077.1 | PF13962.1 | PGG | 443 | 554 | 1.20E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.671 |
| SRR1783600 | control | 0.605 |
| SRR1783602 | moderate drought stress | 0.149 |
| SRR1811619 | moderate drought stress | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.316 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.882 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.168 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.219 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.641 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.576 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.009 |
| SRR2868004 | Drought Stress (root) | 0.190 |
| SRR2967015 | Control (root) | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.527 |
| SRR9715740 | Leaf | 0.064 |
| SRR9715741 | Leaf | 0.161 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.171 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.848 |
| SRR8400027 | Control - Root | 0.513 |