Gene detail

Gene detail information of Glyur000367s00029070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37660.1	4.00E-107	NAD(P)-binding Rossmann-fold superfamily protein
NR	AFK49538.1	3.60E-170	unknown [Medicago truncatula]
COG	YP_007133655.1	6.00E-75	hypothetical protein Sta7437_3181 [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|O80934\|Y2766_ARATH	1.00E-135	Uncharacterized protein At2g37660, chloroplastic (Precursor)
trEMBL	tr\|I3TAJ6\|I3TAJ6_MEDTR	1.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:AFK49538.1}

Sequence

Transcript Sequence

>Glyur000367s00029070.1
GGAGGTTTTGTTCTTCCCTTAGCTAAAAACTTTTTCCATATTATTCTTCCATCACCACGGCACAATGGAACTGTGTGAACTACTCTGATAGGCATGGCTACACGTGTTCCCTTTATCTCCGCTTCCACTTGTCCCAACCAATGCCATAAATACTTCTGGTTGGCACAGTCACTTCCTCTACCAGCTCCCTCTTCCTCCTCATTATTAAGGCTTCCCTCTTCTTATTCCTCTTCTTCTTCGCTGTCACTCGCAAACCACAAGGAGGGTCTCAAGAGGGTTGGAATCAGAACCAGTGTTGTAGCCATGGCCGAATCTTCCAAGAGCACTGTGCTTGTNACTGGGGCTGGTGGTCGCACAGGACAAATAGTTTACAAAAAATTAAAAGAGAGGACAAACCAATATGTAGCTAGAGGCCTGGTTAGAACAGAAGAAAGCAAACAGAAAATTGGTGCTTCTGATGATCTCTTTGTTGGGGATATAAGAGATGCTGAAAGTATTGTTCCGGCAATTCAAGGTATAGATGCTCTCATAATCCTCACAAGTGCAGTGCCTCTGATGAAACCTGGGTTTGATCCAACACAAGGTAAAAGACCAGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTTGACTGGATTGGGCAGAAAAATCAAATAGATGCTGCTAAGGCTGCAGGAGTGAAGCAGATTGTGTTGGTCGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGCTTGGGCAATGGGAATATATTGGTTTGGAAAAGAAAGGCTGAGCAATATCTGGNTGATTCTGGTATTCCATATACAATTATAAGGGCTGGTGGCTTGCAAGACAAAGAGGGAGGTATCCGGGAACTCATCGCACTAAATTTTGAGGAGGCTCAATTTAAGGCATTTGACTTGGCATCAAAACCTGAGGGAGCAGGTTCACCAACAAAGGACTTTAAGGCTCTCTTTTCCCAGATCACTACTCGTTTTTGATTTTGAAATGTTGTTGTCATTGTCCTAAAATCCCTCTTATCTACATTTGAGATTTAAAGCTANCTAGAGCAAATTTACCTTCTGTTTTGGCAATTTAGTATAAGATTGTCTAAACCAAATTATTGACTTCCCGAGTTCTGTTAAAGCCTTGTGAAAAACTCATTNTGTCTACACTAATTAATCAGCGCATCAGTTCATTCTCTTCATGTTAATGAAGTGTGACTGTTCTGCATTTCCTCCCTAGTATATTCCTGAATGTTTTCAACTGCATGATGTGACTATGATTTTGTAAAAAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00367	18388	21680	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000367s00029070.1	PF13460.1	NAD_binding_10	79	261	7.00E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.585
SRR1783600	control	54.945
SRR1783602	moderate drought stress	83.938
SRR1811619	moderate drought stress	82.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	121.897
DRR006520	Root Summer glycyrrhizin high producing strain	119.113
DRR006521	Root Winter glycyrrhizin high producing strain	58.603
DRR006522	Root Winter glycyrrhizin high producing strain	56.062
DRR006523	Root Summer glycyrrhizin low producing strain	101.586
DRR006524	Root Summer glycyrrhizin low producing strain	99.950
DRR006525	Leaf Summer glycyrrhizin high producing strain	210.109
DRR006526	Leaf Summer glycyrrhizin high producing strain	207.847

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.702
SRR2868004	Drought Stress (root)	66.228
SRR2967015	Control (root)	55.742

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	200.916
SRR9715740	Leaf	294.284
SRR9715741	Leaf	163.307
SRR9715739	Root	20.364
SRR9715742	Root	56.031
SRR9715743	Root	46.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.218
SRR8749028	MeJA induced 9h	22.069
SRR8749029	MeJA induced 9h	22.593
SRR8749030	Uninduced	11.573
SRR8749031	Uninduced	5.760
SRR8749032	Uninduced	13.344

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	98.338
SRR8400027	Control - Root	100.225