Gene detail

Gene detail information of Glyur000366s00019239

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23790.1	5.00E-175	AMP-dependent synthetase and ligase family protein
NR	AET04094.2	0	long-chain-fatty-acid CoA ligase (AMP-forming) [Medicago truncatula]
COG	YP_007160865.1	6.00E-119	long-chain-fatty-acid--CoA ligase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q9LK39\|AAE16_ARATH	0	Probable acyl-activating enzyme 16, chloroplastic (Precursor)
trEMBL	tr\|G7LH35\|G7LH35_MEDTR	0	Long-chain-fatty-acid CoA ligase (AMP-forming) {ECO:0000313\|EMBL:AET04094.2}

Sequence

Transcript Sequence

>Glyur000366s00019239.1
TTGTTTGTTACTTTTCTATTTTGTACATTGATCGCAGAGAAACAATATGTTTATGAAGCAATCAACTCAGATGACATTGCCACTCTTGTATACACAAGTGGAACTACTGGAAATCCAAAAGGTGTTATGCTTACCCATCGGAATCTTCTGCATCAGATAAAAAATCTTTGGGTCATTGTACCTGTTGAAGTTGGTGATAGATTTCTAAGCATGCTGCCATCTTGGCATGCATATGAAAGAGCTTCTGAGTATTTCATTTTCACACGCGGTATTGAGCAAGTATACACAACCGTGAGAAACCTAAAGGATGATTTGAAACGTTACCAACCACATTACTTGATTTCTGTTCCTTTAGTTTTTGAAACATTATACAGTGGGATCCAGAAGCAGATATCTACTAGNCCCCTTGTTNGAAAGCTTGTCGNGTTAGCATTCATAAGANTCAGCTTAACATACATGGAGTATAAACGTATTTATGAGGGTGTAATCAGGATAGACTATGATTGTAGAGCTGAACCTTATGATAGACTACTGGACCGGCCCTTGGCTGGAATAAGTGGGGGCGGTAGTTTGCCTTTGCAAGTTGATAAATTTTTTGAGGCAATTGGAGTGAAAGTGCAGAATGCATATGGTTTAACAGAAACTTCACCAGCTATTGCTGCTCGACGACTTAGATATAATGTTATTGGATCCGTTGGGCATCCAATTCAGCATACAGAATTCAAAATAGTAGATTCTGAAACTGGTGAAGTTCTTCCACCTGGTTCAAAGGGCATTTTGAAAGTCAGGGGTCCACAAGTGATGAAAGGAGACTTCAAGAATCCATTGGCTACAAACCAGGCCTTAGATGGGGATGGCTGGCTGAATACTGGTGATCTAGGGTGGATTGTTCCCCACCATTCAACTGGGCGTAGTCGTAACTCTAGTGGTGTGATTGTTGTGGATGGCCGTGCTAAAGACACTATTGTGCTTTCATCAGAAGGTAAAAATGTTGAACCAGCAGAACTTGAAGAAGCTGCCATGAGGAGTAGATTAATTCAACAAATTGTTGTTGTTGGCCAGGATAAGCGACGTCTAGGAGCTATCATCGTTCCTAACAAGGAAGAAGTTCAGAAGGTAGCAAGGGAGTTGTCAATTATAGATCCCAACAGTTCNGATGTTGTTAGTGAGGAAAAAGTGATGAGCCTAATATATAAAGAATTAAAGACCTGGACGTCAGAATCTCCATTTCAAATTGGACCAATCCTTCTTGTAAATGAACCCTTCACGATTGATAATGGTCTAATGACACCCACCATGAAAATTCAAAGGGATAGAGTTGTGGCTCAATACAAGGAGCAAATAGACAATCTATACAAGTGACAAACCCCCATCACCTATTTATAAAAGTCTCCAAATAAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00366	169202	173958	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01897	ACSL, fadD	EC:6.2.1.3	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Fatty acid degradation	map00071
			Peroxisome	map04146
			Quorum sensing	map02024
			Adipocytokine signaling pathway	map04920
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000366s00019239.1	PF00501.23	AMP-binding	22	324	2.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.246
SRR1783600	control	16.080
SRR1783602	moderate drought stress	11.919
SRR1811619	moderate drought stress	12.103

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.463
DRR006520	Root Summer glycyrrhizin high producing strain	2.389
DRR006521	Root Winter glycyrrhizin high producing strain	1.247
DRR006522	Root Winter glycyrrhizin high producing strain	1.170
DRR006523	Root Summer glycyrrhizin low producing strain	15.001
DRR006524	Root Summer glycyrrhizin low producing strain	14.957
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.920
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.604

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.041
SRR2868004	Drought Stress (root)	0.103
SRR2967015	Control (root)	0.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.130
SRR9715740	Leaf	9.765
SRR9715741	Leaf	15.789
SRR9715739	Root	1.800
SRR9715742	Root	2.547
SRR9715743	Root	1.923

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.041
SRR8749029	MeJA induced 9h	0.361
SRR8749030	Uninduced	0.109
SRR8749031	Uninduced	0.176
SRR8749032	Uninduced	0.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.855
SRR8400027	Control - Root	13.133