Gene detail

Gene detail information of Glyur000366s00019231.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase
NR	XP_007034216.1	S-adenosyl-L-homocysteine hydrolase [Theobroma cacao]
COG	YP_003396398.1	adenosylhomocysteinase [Conexibacter woesei DSM 14684]
Swissprot	tr\|Q01781\|SAHH_PETCR	Adenosylhomocysteinase
trEMBL	tr\|A0A061ELA5\|A0A061ELA5_THECC	Adenosylhomocysteinase {ECO:0000256\|RuleBase:RU000548}

Sequence

Transcript Sequence

>Glyur000366s00019231.1
GAAACAAAATCAAACGGTTGAATATGGCCAATTGATTCAGAATTGAAAAAGAAAATGTTAGTTAGGTCCATGAAGGGGAATGAAATTAGAAAAAAATACAGATCTACTCCAGTCCAGTCCAGTCCANCAACTCCCAAAACCCCTATTAGCTGCCTATTTATACCCACTCCTCATCCTCTCATTTCCCCTCACACTCACTGCTACCACCCCTCTCTCTCTCTTACTCAAACCTTTCTTCTTCTTCTTCATTTCACCAACCGCCATCCATCACCATGTCTCTCTCAGTAGAGAAAACCTCAACTGGNCGTGAGTACAAGGTGAAGGACCTTTCTCAGGCAGACTTTGGTCGCCTCGAGATCGAGCTTGCGGAGGTAGAGATGCCGGGACTAATGTCTTGCCGAACCGAGTTCGGACCCTCACAACCCTTCAAAGGAGCAAGGATCACCGGATCCCTCCACATGACAATCCAAACCGCAGTACTCATCGAAACCCTAACAGCGCTCGGCGCCGAAGTACGCTGGTGTTCCTGCAACATCTTCTCCACACAGGACCACGCCGCCGCCGCCATAGCACGTGACAGCGCCGCCGTGTTCGCGTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGTACCGAGAGGGCACTCGATTGGGGCCCCACCGGTGGACCCGACCTCATCGTTGATGACGGTGGTGATGCCACGCTTCTCATCCATGAGGGTGTTAAGGCTGAGGAGCTCTTTGAGAAGACCGGTCAGTTGCCTGACCCTGCTTCCACTGACAACGCTGAGTTCCAGATCGTGCTTACCATTATTAGGGATGGGTTGAAGACTGACCCTCAGAGGTACCGTAAGATGAAGCAGAGGCTCGTTGGGGTTTCTGAGGAGACTACTACTGGTGTTAAGAGGCTCTATCAGATGCAGCTTAATGGGACTCTCTTGTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGTTTGACAACTTGTATGGATGCCGTCACTCTCTCCCAGATGGACTGATGAGGGCCACTGATGTTATGATTGCTGGGAAAGTTGGTGTGGTCTGTGGGTATGGAGATGTTGGGAAGGGTTGTGCTGCTGCTTTGAAGCAAGCTGGGGCTCGTGTGATTGTGACCGAGATTGATCCCATTTGTGCCCTTCAGGCCCTCATGGAAGGTTTCCAGGTTCTGACCCTGGAGGATGTTGTCTCTGAGGCCGATATCTTTGTTACCACCACCGGNAACAAGGACATCATCATGGTTGACCACATGAGGAAGATGAAGAACAATGCCATTGTTTGCAACATTGGTCACTTTGACAATGAGATTGACATTCTTGGCCTTGAGACCTACCCTGGCGTGAAGCGCATCACCATCAAGCCACAAACTGACAGATGGGTCTTCCCTGAGACCAACACCGGCATCATTGTCTTGGCCGAGGGTCGTTTGATGAACTTGGGGTGTGCCACGGGGCACCCCAGTTTTGTGATGTCCTGNTCCTTCACCAACCAGGTCATTGCTCAGCTTGAGTTGTGGAAGGAGAAGAGTAGTGGCAAGTATGAGAAGAAGGTGTACGTTTTGCCTAAGCACCTTGATGAGAAGGTGGCTGCACTTCACCTTGGCAAGCTTGGAGCTAAGCTCACCAAGCTTTCCCAATCCCAGGCTGATTACATCAGTGTGCCAGTTGAGGGTCCATACAAGCCTGCTCACTACAGTGGGGTGGGGTGGGACGGGGGAATGGAAGGATATCGTATCGGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00366	146313	148975	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01251	E3.3.1.1, ahcY	EC:3.3.1.1	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006730 one-carbon metabolic process

molecular_function
GO:0004013 adenosylhomocysteinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000366s00019231.1	PF05221.12	AdoHcyase	13	483	1.40E-141
Glyur000366s00019231.1	PF00670.16	AdoHcyase_NAD	240	403	5.10E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	425.032
SRR1783600	control	432.884
SRR1783602	moderate drought stress	321.279
SRR1811619	moderate drought stress	316.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	836.490
DRR006520	Root Summer glycyrrhizin high producing strain	873.496
DRR006521	Root Winter glycyrrhizin high producing strain	302.380
DRR006522	Root Winter glycyrrhizin high producing strain	291.502
DRR006523	Root Summer glycyrrhizin low producing strain	368.997
DRR006524	Root Summer glycyrrhizin low producing strain	370.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	582.910
DRR006526	Leaf Summer glycyrrhizin high producing strain	578.076

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	548.392
SRR2868004	Drought Stress (root)	284.379
SRR2967015	Control (root)	350.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	147.375
SRR9715740	Leaf	170.795
SRR9715741	Leaf	198.407
SRR9715739	Root	491.554
SRR9715742	Root	572.949
SRR9715743	Root	573.858

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	369.113
SRR8749028	MeJA induced 9h	288.611
SRR8749029	MeJA induced 9h	157.632
SRR8749030	Uninduced	89.901
SRR8749031	Uninduced	52.417
SRR8749032	Uninduced	87.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	388.322
SRR8400027	Control - Root	367.798