Gene detail information of Glyur000366s00019226.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78520.1 | 2.00E-34 | Carbohydrate-binding X8 domain superfamily protein |
| NR | AFK36215.1 | 3.01E-65 | unknown [Lotus japonicus] |
| Swissprot | tr|P52409|E13B_WHEAT | 3.00E-23 | Glucan endo-1,3-beta-glucosidase (Precursor) |
| trEMBL | tr|I3S7H3|I3S7H3_LOTJA | 1.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:AFK36215.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00366 | 129350 | 130956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000366s00019226.1 | PF07983.8 | X8 | 68 | 137 | 2.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.530 |
| SRR1783600 | control | 51.481 |
| SRR1783602 | moderate drought stress | 20.057 |
| SRR1811619 | moderate drought stress | 20.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.230 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.522 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 80.296 |
| SRR2868004 | Drought Stress (root) | 34.793 |
| SRR2967015 | Control (root) | 36.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.487 |
| SRR9715740 | Leaf | 2.627 |
| SRR9715741 | Leaf | 2.765 |
| SRR9715739 | Root | 32.525 |
| SRR9715742 | Root | 23.016 |
| SRR9715743 | Root | 20.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.386 |
| SRR8749028 | MeJA induced 9h | 1.394 |
| SRR8749029 | MeJA induced 9h | 2.688 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 199.769 |
| SRR8400027 | Control - Root | 225.094 |