Gene detail information of Glyur000366s00019217 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03850.1 | 3.00E-18 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003618578.1 | 1.36E-38 | 30S ribosomal protein S28e [Medicago truncatula] |
| COG | YP_004893693.1 | 4.00E-15 | 30S ribosomal protein S28e [Thermoproteus tenax Kra 1] |
| Swissprot | tr|P46302|RS28_MAIZE | 1.00E-34 | 40S ribosomal protein S28 |
| trEMBL | tr|I1JQD4|I1JQD4_SOYBN | 5.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00366 | 72808 | 74369 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000366s00019217.1 | PF01200.13 | Ribosomal_S28e | 14 | 77 | 1.50E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.727 |
| SRR1783600 | control | 3.568 |
| SRR1783602 | moderate drought stress | 6.235 |
| SRR1811619 | moderate drought stress | 5.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.470 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.718 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.643 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.103 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.690 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.393 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.336 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.416 |
| SRR2868004 | Drought Stress (root) | 30.169 |
| SRR2967015 | Control (root) | 27.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.831 |
| SRR9715740 | Leaf | 1.582 |
| SRR9715741 | Leaf | 1.827 |
| SRR9715739 | Root | 2.738 |
| SRR9715742 | Root | 4.288 |
| SRR9715743 | Root | 5.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.358 |
| SRR8749028 | MeJA induced 9h | 9.514 |
| SRR8749029 | MeJA induced 9h | 17.209 |
| SRR8749030 | Uninduced | 6.774 |
| SRR8749031 | Uninduced | 3.177 |
| SRR8749032 | Uninduced | 6.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.848 |
| SRR8400027 | Control - Root | 8.000 |