Gene detail information of Glyur000366s00019205 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41180.1 | 3.00E-06 | VQ motif-containing protein |
| NR | XP_006576783.1 | 4.39E-26 | PREDICTED: sigma factor binding protein 1, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LDH1|SIB1_ARATH | 2.00E-12 | Sigma factor binding protein 1, chloroplastic (Precursor) |
| trEMBL | tr|I1JN53|I1JN53_SOYBN | 2.00E-26 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G28360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00366 | 1221 | 1724 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000366s00019205.1 | PF05678.9 | VQ | 35 | 64 | 2.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.443 |
| SRR1783600 | control | 4.092 |
| SRR1783602 | moderate drought stress | 9.666 |
| SRR1811619 | moderate drought stress | 9.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.239 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.310 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.457 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.505 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.995 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.467 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 115.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 112.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.125 |
| SRR2868004 | Drought Stress (root) | 0.429 |
| SRR2967015 | Control (root) | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.163 |
| SRR9715740 | Leaf | 21.572 |
| SRR9715741 | Leaf | 9.223 |
| SRR9715739 | Root | 0.119 |
| SRR9715742 | Root | 6.664 |
| SRR9715743 | Root | 2.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.199 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.413 |
| SRR8400027 | Control - Root | 1.489 |