Gene detail

Gene detail information of Glyur000365s00022136.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27310.1	2.00E-26	B-box type zinc finger family protein
NR	XP_007132601.1	8.81E-48	hypothetical protein PHAVU_011G108800g [Phaseolus vulgaris]
Swissprot	tr\|O23379\|COL11_ARATH	1.00E-09	Putative zinc finger protein CONSTANS-LIKE 11
trEMBL	tr\|V7AH59\|V7AH59_PHAVU	3.00E-48	Uncharacterized protein {ECO:0000313\|EMBL:ESW04595.1}

Sequence

Transcript Sequence

>Glyur000365s00022136.1
CAAAAAAAAAAAAATTTAAGAAACAAATCGGAGTCACAAATGATTTGAGAAATTTAACGCTACAGTAGAAGGGTAGTTTCGGCTTCCGGCAGAAAACCAGCAATTTATTTTATAAATTTCGCAGACAACATAACGCTGTCTCTTTTTTCTCTTTCGTCTTTCCCAGTACTCGCCCATCCAGTGGAGAGAGAAAGTAGAAAAGAAAAAGAGCGGAGGAAGCAGAGAGAAAATCTCCAGGAAAGTAAAAACAGAGAAAAAGCAGAGGAAAAAAAAAGAACAGCATTTTAATTATTAGTCAGTAGCTTCGAAAGGATGGAGCANAGCACGGTGGAGATGAAGAAGTGCGATCTGTGCAAGGTTCCGGCNAGGATTTTCTGTGAATCGGACCAGGCAAGCTTATGCTGGGACTGCGANGCCAAGGTTCACGGTGCCAACTTCTTGGTAGCCAGACACACCAGGACCCTCCTCTGCCGTATCTGTCGCTCCCGGACGCCGTGGAAGGCCTCCGGCNCCACCCTCGGCAACACTGTCTCCGTCTGCGAGCGTTGCGCCGCCGGAGAAGAAGAAGAAGAAGCGGAAGAGAGCGAAGAAGGAGACAATGACGACGAGATGGACGACGATTTTGACGACGTCGTCGACGAGGATGGAGACAATCAGGTCGTGCCTGGGTCCTCCACGCCTCCTCCACCGGCGGCGAGTTCCTCCGGCAGCGAGTGGTCGTCTAGCAGGTGCAACAATGGCAACAACAGCGGCGATGGAGATGTTTCTGATTCCGTTTCCGAACCAGTAACGACAACAGCCTCGTTGAAACGACGGCGTGAGGATGATGCTTCAGATCGTGATCTCCAGGAGAGTCCGAACGGGTTAACATCTTAACGGGTGTGCGGTGGGGAGTGGAGTGAGGAGGTGGCTTGTGGCGGAGAACCGCCGTCGAAGGAATGGCTGAGGCCGCGTGATAGAGCATCCGACGCCGTTTAATGTTGGGGAAACGGAGTTTCTCNGCCGCAAGATCGACGTCCTATAGCACACGATATTTGAGCTATTTGTTTTTTAACTTCTAATCTAACAGCTTACAGCACTGCTGGTTTTTGACTATTGGTTTGTTAGTTGATTGTTGTGGATTAAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	175036	176292	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022136.1	PF00643.19	zf-B_box	7	50	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.632
SRR1783600	control	0.581
SRR1783602	moderate drought stress	1.256
SRR1811619	moderate drought stress	1.511

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.403
DRR006520	Root Summer glycyrrhizin high producing strain	2.274
DRR006521	Root Winter glycyrrhizin high producing strain	34.467
DRR006522	Root Winter glycyrrhizin high producing strain	33.981
DRR006523	Root Summer glycyrrhizin low producing strain	1.360
DRR006524	Root Summer glycyrrhizin low producing strain	1.471
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.967
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.843

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.761
SRR2868004	Drought Stress (root)	3.406
SRR2967015	Control (root)	4.160

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.830
SRR9715740	Leaf	0.390
SRR9715741	Leaf	1.059
SRR9715739	Root	1.144
SRR9715742	Root	2.281
SRR9715743	Root	1.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.592
SRR8749028	MeJA induced 9h	56.047
SRR8749029	MeJA induced 9h	68.938
SRR8749030	Uninduced	30.647
SRR8749031	Uninduced	47.848
SRR8749032	Uninduced	83.161

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.130
SRR8400027	Control - Root	2.456