Gene detail information of Glyur000365s00022135 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03260.2 | 2.00E-138 | Outer arm dynein light chain 1 protein |
| NR | XP_003539887.1 | 0 | PREDICTED: uncharacterized protein LOC100790061 [Glycine max] |
| COG | YP_004508864.1 | 3.00E-14 | leucine-rich protein [Porphyromonas gingivalis TDC60] |
| trEMBL | tr|K7LU20|K7LU20_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11240.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00365 | 160599 | 163292 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000365s00022135.1 | PF13855.1 | LRR_8 | 429 | 484 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.175 |
| SRR1783600 | control | 14.922 |
| SRR1783602 | moderate drought stress | 19.251 |
| SRR1811619 | moderate drought stress | 18.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.351 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.627 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 67.019 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.537 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.081 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.448 |
| SRR2868004 | Drought Stress (root) | 30.219 |
| SRR2967015 | Control (root) | 28.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.413 |
| SRR9715740 | Leaf | 30.490 |
| SRR9715741 | Leaf | 34.034 |
| SRR9715739 | Root | 6.337 |
| SRR9715742 | Root | 22.382 |
| SRR9715743 | Root | 18.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.652 |
| SRR8749028 | MeJA induced 9h | 35.040 |
| SRR8749029 | MeJA induced 9h | 25.103 |
| SRR8749030 | Uninduced | 43.312 |
| SRR8749031 | Uninduced | 72.985 |
| SRR8749032 | Uninduced | 48.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.287 |
| SRR8400027 | Control - Root | 23.466 |