Gene detail

Gene detail information of Glyur000365s00022131.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19130.1	0	S-locus lectin protein kinase family protein
NR	KEH16197.1	0	G-type lectin S-receptor-like Serine/Threonine-kinase plant [Medicago truncatula]
COG	YP_001958461.1	2.00E-27	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O64477\|Y2913_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (Precursor)
trEMBL	tr\|A0A072TFN9\|A0A072TFN9_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000365s00022131.1
ATGGACAACATGAAGAAGAAACCATGGCTCTGGTTTCCTCTCCTCATCACCTGCTTCTCTTTTCACACCTACCCCTCCCTTTCAGCTCTTACCACCATCTCAGCAAATCAATCTCTTTCTGGTGACCAAACTCTTGTCTCCAAAGATGGCAACTTTGAATTGGGTTTCTTCAACCCAGGTAACTCCTCTAACTACTACATAGGCACGTGGTACAAAAAGGTATCCATAAGGACATATGTTTGGGTAGCAAACAGAGATGTCCCAGTTTCTAATAAGAATTCTGCCAACTTCACAATTTCGGGTGGTAATTTAGTGCTCCTGGATGGGTCTCAAAATCTAGTTTGGTCCACAAATTTGAGTTCTCCTAGCTCAGGTTCTGTAGTTGCTGTCCTCCTAGATTCTGGGAATCTCATACTAAGCAATAGGCCTAACGCTAACGAATCAGAGGCTCTGTGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCGGGTGGAAAAATAAGATTGGATAAGAAAACAAAGAAGCCTCAATATCTCACTGCATGGAAGAACATCGAAGACCCCAAAACAGGCCTATTCTCTCTTGAACTAGACCCCGAAGGTACCAATTCATACCTGATCCGTTGGAACAAATCCGAACAGTATTGGACAAGTGGTTCTTGGAATGGGCATATCTTCAGCTTGGTTCCTGAGATGAGGTCAAACTACCTCTACAACTTCACCTTTGAGTCGAATGAGAACGAGAGCTACTTCACCTACTCCGTGTACAACACTTCTGTCATATCCCGTTTCGTGATGGATGTCTCGGGGCAGATCAAGCAATACACCTGGCTGGAATATTCTCACCAGTGGAATCTGTTCTGGTCACAGCCAAGAAAACAGTGCGATGTCTANGCTTTCTGCGGTGCATTTGGTAGCTGCACTGAGAATTCCAAGCCATATTGTANCTGTTTGAACGGTTATGAGCCAAAGTCACAGTCTGATTGGAATCTAGGGGATTACTCACGTGGGTGTGTGAAAAGGAACAACTTTCAATGCGAGGCATCAAATACTTCAAGTGGGGCCAAAGACAGGTTCCAAACAATGCCCAATTTGGCTTTACCTGAACATGCACAACCTGTGAAAGCAGCTGGTGCTATTGCGGAATGCGAGTCCACTTGCTTTAACAACTGTTCCTGCACCGCGTATGCTTATAACAGTAGCGGGTGTTTTGTTTGGAATGGAGATCTCTTGAATCTGCAACAGCTTTCTCAAGATGACAGTAGCGGACAGACTTTGTTTCTCAAACTCGCTGCATCCGAGTTTCATGACTCTAAGAGCAACAACGGGACAACCATTGGTGTTGTTGCTGGTGCGGTTGGTGGTGGCATAGTGGTTCTCCTTGCCCTGCTTCTATTTGTGTTGCTGAGGCGAAGAAAGAGACTTGCTGGTTCAAGAACTTCGGTGGAGGGCTCATTGATTGCATTCGGGTACAGAGATTTACAAAATGCAACAAAGAATTTCTCGGAGAAACTTGGAGGGGGAGGTTTTGGTTCTGTCTTCAAAGGAACATTGCCTGATTCAAGTGTCATAGCGGTGAAGAAACTCGAGAGCGTTAGCCAGGGAGAGAAGCAGTTCAGGACAGAAGTGAGCACAATTGGGACGGTTCAACATGTCCACCTTGTTAGGCTTCGTGGGTTCTGTTCTGAGGGTGCCAAAAAACTGCTAGTCTATGATTACATGCCAAATGGCTCCTTGGATTCTAACCTGTTTCACGAAAAGAACTCCAAGGTGTTGGATTGGAAAATGAGATACCAAATCGCTCTGGGAATAGCTAGGGGATTGACTTATCTTCACGAGAAGTGCAGGGATTGTATCATACACTGCGACGTGAAGCCAGAGAACATTCTCCTAGATGCTGATTTTTGTCCAAAGGTAGCAGATTTTGGCCTTGCAAAGCTTGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGAACAAGAGGTTATCTTGCCCCAGAATGGATTTCTGGGGTGGCTATTACCGCCAAAGCTGATGTTTACAGCTATGGGATGGTGCTTTTTGAGCTTGTTTCAGGTAGAAGGAACTCTGAGCCTTCTGAAGATGGCCAAGTTAGGTTCTTTCCTACATTGGCTGCAAACATGGTACACCAAGGAGGCAACTTGATTACCCTTTTGGACCCTAGGTTGGAAGGAGATGCTGATGTTGAGGAGGTAACTCGAGTCATAAAAGTTGCATCGTGGTGTGTCCAAGATGATGAGGCTCAAAGGCCATCCATGGGTCANGTAGTTCAAATGCTTGAAGGGGTCTTGGCTGTGACTGTGCCTCCAATTCCAAGAACCCTCCAAGCCTTTGTTGACAACCAGGAGGACATAGTTTTCTTCACTGACTCAAGCTCCACACAGAGTTCACAAGTAAAGAGCAGCGTCTCAACAGACTCCTCTCAAGCCAAAAGCAACAACCTCTCATCCGCTAGCCCCGAGTCCTCTGCACAAAATCAGGAGGACACGTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	149163	151688	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022131.1	PF01453.19	B_lectin	77	189	7.90E-33
Glyur000365s00022131.1	PF00954.15	S_locus_glycop	217	326	2.40E-34
Glyur000365s00022131.1	PF08276.6	PAN_2	356	414	5.40E-16
Glyur000365s00022131.1	PF00069.20	Pkinase	503	768	1.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.257
SRR1783600	control	3.341
SRR1783602	moderate drought stress	2.944
SRR1811619	moderate drought stress	2.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.983
DRR006520	Root Summer glycyrrhizin high producing strain	3.065
DRR006521	Root Winter glycyrrhizin high producing strain	4.860
DRR006522	Root Winter glycyrrhizin high producing strain	4.785
DRR006523	Root Summer glycyrrhizin low producing strain	8.640
DRR006524	Root Summer glycyrrhizin low producing strain	8.890
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.742
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.857

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.916
SRR2868004	Drought Stress (root)	48.246
SRR2967015	Control (root)	53.758

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.374
SRR9715740	Leaf	27.740
SRR9715741	Leaf	51.251
SRR9715739	Root	6.099
SRR9715742	Root	18.167
SRR9715743	Root	15.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.847
SRR8749028	MeJA induced 9h	5.740
SRR8749029	MeJA induced 9h	4.568
SRR8749030	Uninduced	6.691
SRR8749031	Uninduced	10.321
SRR8749032	Uninduced	6.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.831
SRR8400027	Control - Root	14.876