Gene detail

Gene detail information of Glyur000365s00022128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23250.1	2.00E-50	myb domain protein 15
NR	KHN41177.1	1.27E-121	Myb-related protein Myb4 [Glycine soja]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	1.00E-58	Myb-related protein Myb4
trEMBL	tr\|I1KF82\|I1KF82_SOYBN	6.00E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G45540.1}

Sequence

Transcript Sequence

>Glyur000365s00022128.1
ATGGGTAGAACACCTTGCTCCCACAAAAGAGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAATAAGTTGGTTTCTTACATTACTAAATATGGTCACTGGAATTGGCGCCAATTGCCCAAGTTTGCAGGTCTTGATAGGTGTGGAAAGAGCTGCAGGTTGAGGTGGATGAATTATTTAAGGCCAGGCATAAATAGAGGGAACTACACTCAAGAAGAAGAAGAGATTATTGTCAAACTGCACTCAATGTTTGGAAATAGGTGGTCTCTGATTGCCTCTCACTTACCTGGAAGATCAGACAATGGGATAAAGAATCATTGGCACGCCCATCTTAAGAAGCGCTTTCAACACACTTCAGTAACAACAAATGACGAAAATGTCACAGATGAAGCCTCCAAGTCAAAGCAAGAGAAGGATTTGGTGGAAATTGGTGACCCTTTCCAAAACATTAACTCTCCAGCTACTTGTCAGATCCCTGATGATTCTCCAATATCGTCGTCCCTGCAAATACCATTGAGTGATATTTTCTGCACTGCACCATCAAGTAGTGATGATCAGAATTCGGTTCTGGACGACCTTGCTAATTTTCTGGACACAGACACAGATCCTATATCTGCATATTCTTGGACAGAACTCTACGCGGCTGACATTTCCTACTTCCCGAACGAATTATTGGCACCTTTCGTGAGTGAACCTGAATCTTTCTGTACGAGATCGATGGTGAGAACCCCATGTTGTGACAACAAAGGGCTGAAGAAAGGAACATGGACACCTGAGGAAGACAAGAAGTTGATTGATTATATTACTAGATATGGCCACTGGAATTGGCGCCTACTCCCCAAGTTCGCAGGACTTGCGAGATGCGGGAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGGCCAAATCTCAAAAGAGGGAACTACACTTCAGAAGAGGAGGAGACTATTATCAAGCTTCACAAACTTCTGGGTAACAGATGGTCTGCCATTGCTGCTCAAATGCCAGGAAGAACTGACAACGAAATCAAAAACTACTGGCACACCAACCTCAAGAAGCGATATGACCACAACTCAGTAACAAAAGCTAAAGTCTCCAATTCAAAGGACCACCCCCCAGTTGAATCTGCAAACAACGTAGCTGCAGCTNGTAATTCCTTCCAAAACCTTGATGCCACCCAATTAGCCGAATCTTACTCATTTTCCCAGCACTACTACTCATCCTCCACTGAATCCTCCTCCACAAACACAGAGTGCCCTGCTGTTACCAGCAACGAAAATCTGGTTCTGGAAGATGAATTTGCCTTTCTAGATGCAGATATGTCTCCTTTGGTTGAAAACTTCTGGTTAGAACCATATAATATGATTGACATTATTTCCTCTGTCCCAAGTAGTGAACCTGAGTACTTTAGCCCAATGGCGAGAACCCCTTCCTGTGACAAAAGTGGATTAAGGAAAGGTACTTGGACTGCGGAGGAAGATAGGAAGTTAATTGCTTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTCCCTAGGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATGAATTATCTAAGGCCTAACATCAAAAGAGGGAACTTCACTCAAGAAGAAGAGGAGTGCATCNTCAGAATGCACAAAAAGATGGGCAATAGATGGTCTGCGATTGCTGCTGCGTTAGAGGGAAGAACAGATAACGAAGTGAAGAACCATTGGCATACCACTCTCAAGAAGAGATCACAACAGAACAACAACACAGTCACAATTAATGAAGAAGCCAAAGCCAAAGACTCAGTGACCAACAATGATGTTGTTTCTGTTTTACAAGTTAATACTACGAGTAGTACTACTCCAGCTACTTCTAATTCCCAGTTCTCAGACATCACTGGACCATGGTCCCCACTATCATCCTCCAGCGAGTTCTCTTCCATAACTTCAGATCACAGTAGTACCACTGCTGCCAGTAACGAAAAGTTTGTGTTTGAAGATGATTTTGGATTTCTTGATGCATTCGCAGATCCCGTGAATGAAGATTTCTGGACAGAGCCATTTCTCGCTGACCTTTCCTACAATAGTACTAATTGTGCTTCTCAAAATCAATTAGATACTACACAGATATTCAATGATGCTTGTGTAGTGTCTCCCCATCAATCGTCCAGTGAAAGTTTGGTTCTGGAGAATGATTTTGGCAGCTTTCTAGATGCATACACGGAGCCAACGATTGATAGTTTTTGGACACAACCATATGTGGCTGATGACATGTCCTACGTTCCAACCGAACCGCTGACACCTAATTTTGTGGCGGAATCTGAATATTTTTCTACAGTATATGATGCAGATCTCTGGAGTTAATTTAGTATGATTGTGAACATTTTAATTAGCTAGCCTCTTCTATATATAATCGATAAAATTACTCCATGCTAGCTTNGTGATCATCAATAGTTTCATCATGACAATAACGGTGGTACTTAATTTATACTGGGGTAAATGTTGAATTCCGGTTAATTCATGAGATGGGAGAATTATTCTATAAATTTTGAAATAGTAAGACGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	110690	132666	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	14	61	4.20E-13
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	67	111	6.30E-14
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	254	301	1.20E-13
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	307	351	3.50E-15
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	487	534	1.20E-12
Glyur000365s00022128.1	PF00249.26	Myb_DNA-binding	540	584	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.056
SRR1783600	control	0.057
SRR1783602	moderate drought stress	0.018
SRR1811619	moderate drought stress	0.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.440
DRR006520	Root Summer glycyrrhizin high producing strain	2.468
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.956
DRR006524	Root Summer glycyrrhizin low producing strain	1.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.182
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.594
SRR2868004	Drought Stress (root)	27.421
SRR2967015	Control (root)	30.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	149.011
SRR9715740	Leaf	76.927
SRR9715741	Leaf	178.222
SRR9715739	Root	4.113
SRR9715742	Root	24.245
SRR9715743	Root	17.876

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.128
SRR8749028	MeJA induced 9h	0.250
SRR8749029	MeJA induced 9h	0.094
SRR8749030	Uninduced	2.143
SRR8749031	Uninduced	0.533
SRR8749032	Uninduced	3.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.335
SRR8400027	Control - Root	13.964