Gene detail

Gene detail information of Glyur000365s00022119

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28100.1	1.00E-106
NR	XP_007132620.1	0	hypothetical protein PHAVU_011G110300g [Phaseolus vulgaris]
Swissprot	tr\|Q9SUC9\|UGPI7_ARATH	4.00E-132	Uncharacterized GPI-anchored protein At4g28100 (Precursor)
trEMBL	tr\|V7AGC1\|V7AGC1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04614.1}

Sequence

Transcript Sequence

>Glyur000365s00022119.1
CACAAATGAGAGTGAGAGAGAGAGAGACCACAGGCAGCGAGTAACGGAAGCAGAAGAAAAGTAACGTACATGTAGCCAAGCCAGCCCCTCTTAAGCACCACCTCGCCACCTTTTCCGTGTGCTTTAGCATGCGCTGGTGGTTGTTTTAGCAATGCTCCAGTAGTCAAATNATCATGGGTCTACGAATCTGAGAGGAAAAACACAACTAGAAACTCTCTACAAACTCCTCCCTTTCCCTTCTTCTGCTTTTGAGTATATCTCTCGAATCTCCTCACGCCCCTCTCTCTATAATTCCCAAGAAACCTAAATCCACTTTCTCGGATAATTAAACAAAACAAAGCGTCCCCAAAAGACACTCTTCCTTTTCAACCCCATTCCCCCCATCCCTTTCTCCGCCACCCAAATATTTTCAACGATCCCTTTTCCCCTCTCACACCCCTACCTTTCCTCAAATTTTTATTTTTCTCGAATCCCAAACCAAACCAAAAAAATGCAATCATTCACTTCCATTCTCGCGTGCCTTGCTTTCTTCTCTTCAGTGGTGGTACTATTGTTGCTGTCCTTTACTCACGCCGGTTTATTATCCCAACCGGTGAGCGACCCGAACCAGCCTCTCGAACCGGGCGAATACCCGTCGTCGAACACGGTCCCAGCATTCCCGGTCCAGACCCAAGCCCAGACCTGCCAACTGGACCTATCCAACGAGCTATTCGGGGGAGTGAAGGCCGCGTGCGGGAAGGACCTCGACCGGAGCCGGTGCTGCCCGGTTCTCGCGGCGTGGCTGTTCGCGGCGCACGCCCGGACGGCCCTTGAGGTGTCCGCCGGCGCTCCTGCTCCGGCGAGCGGCGACCTGCCGATGATGCCGGACGACTCGCAGAAGTGCGTGAACTCGCTGCAGGACTCGCTGCTGAGTCGCAACATTCGGATCCCTCAGCCCAACTCCACGTGTGACGCAATCCTCTGTTTCTGCGGAATCAGGCTTCACCAGATAAGCTCCTTGTCCTGCCCNGCCGCGTTCAACGTCTCCGCCCCTCACAGAAACGCCACCCCCACCGCCGCCGTTCGCAACTTGGAAAACAACTGCCGTAACGCTTCCTATGCCGGTTGCACCAAGTGCCTCGCTTCCCTACAAAAGGTGAAGGGGAACAGGAATGAGACGAAGGGGAAAGGAGGGAGTGAGAGGGTTAAGAAGATGTTCAACCGTGANTGCCAACTGATGGGTTTGACATGGTTGTTGGCGAAGAACAAAACGGCATACATACCCACCGTTTCGGCGGTGCTGCGTGCCATGATGTACAGTGCTCACCCGCATGAATCCAAGTGTAGTCCTGACCAGGAGAACATGCCTCTCGCCGTTGATTCTCTTCAGTTCGAGAGTGGCCATGCGCCATCCTGGCCGTCCAAATTTTGGGTTACGCTTTTGCCCCTAATCATTCTCGTTTCTTATTTTGTTGTTTAAAAAAAGGGCCCTGTTTACTGTTTAGTTGAATTGTTGCTTCTCAGTGTCCTCCTCTTCCTCAGCNGCGTCCTTTTGGTCTGATTCTTGGATGCTTCTGTCACGTGAAGTATAGCTAGTGGACAAAAAATCAGCAATGGAGGATGCCTTCTAACCTATATTTTGCTCTGTAAATTTCACATCATGTGATCAATTAGTCCATTAATTACCTCACATTTTACATAGAAAGATGAAGCTTATTCTGTGCGTTTATTCTCTAATCTTTGTTTTCTTTGCAGAGTAGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	52519	54740	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.221
SRR1783600	control	28.595
SRR1783602	moderate drought stress	31.613
SRR1811619	moderate drought stress	31.372

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.581
DRR006520	Root Summer glycyrrhizin high producing strain	35.497
DRR006521	Root Winter glycyrrhizin high producing strain	0.127
DRR006522	Root Winter glycyrrhizin high producing strain	0.062
DRR006523	Root Summer glycyrrhizin low producing strain	15.244
DRR006524	Root Summer glycyrrhizin low producing strain	15.681
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.485
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.476

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.996
SRR2868004	Drought Stress (root)	39.381
SRR2967015	Control (root)	36.434

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.827
SRR9715740	Leaf	2.792
SRR9715741	Leaf	2.636
SRR9715739	Root	24.835
SRR9715742	Root	21.949
SRR9715743	Root	22.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.130
SRR8749028	MeJA induced 9h	10.603
SRR8749029	MeJA induced 9h	24.315
SRR8749030	Uninduced	1.724
SRR8749031	Uninduced	2.747
SRR8749032	Uninduced	12.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.854
SRR8400027	Control - Root	33.319