Gene detail

Gene detail information of Glyur000365s00022115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21450.1	4.00E-74	PapD-like superfamily protein
NR	AFK48979.1	2.06E-152	unknown [Lotus japonicus]
Swissprot	tr\|Q8VYN2\|VAP42_ARATH	4.00E-115	Vesicle-associated protein 4-2
trEMBL	tr\|I3T8Y7\|I3T8Y7_LOTJA	8.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:AFK48979.1}

Sequence

Transcript Sequence

>Glyur000365s00022115.1
CTGTAAAGGCCAGGAACCCACAAACAGTTACACACAAATCAAATAAAGAAAAATCCCAACCCTCGTAATATTATCCAATTTCGTCAAGGACTAGTTTGGTATTAACTAGGAGGAGATATGAAAAAAATTATCATTGTATTAATTATATNGAGTTAAAAAAAGAAAAGGAAAGTAAGAGATTAGATCGCATGAAGTAAATTCCATATTCCCATGCTTTCCCATACCAATTAATCTCATTTCCGTATGCTACCAAATTACCTCAATCATGAAGATACTACGAACCACCATTTTGGACAAAACATGAAAAAGTTATAGATCACATACAATGAAAGGTCGCGTTCAATCTTCGTTTTGTTGAGGAAAACTACGTTAAAGAGCTTTNGCGAATAGAGACAACCCGAGAAAAGTGTCCGATACACTACAAGTGCCAATTCTATCTTCAACCACAAAACAAACAAAAGGCTAAAACTTTGCCACCAATTCAGCAGAAACCCAGTTTCTGTTTGTCCCATTTTCCGGCGAGTCCAGTGAGATTCCGGCTAAGAATGGCGGTGGACAGTGAAAAAACGGGGTCTGATGGAAAAGTTTGGAGCTTTTGTAGCATGCCATTTTGGCAAACAACTCATGCTTCTTCTTCTTCACCTTCTTCTTCAACATCTTCTATGCACAGTTTTCATCAGCAAAGCCAGATTCTTCAGTCTCTTGATAGATCGACTTATCAGCCTTCCAGCACCGTTTCATCCATGGCCAAGTCTCTTCTCCCTTCAAGGAGAAGGCTCCGNCTTGATCCTCCCAACAAGCTCTACTTTCCCTATGAACCTGGTAAGCAAGTTAGAAGCGCCATCACAATTAAAAACACTTGCAAGTCTCGTGTAGCCTTCAAGTTTCAAACAACTGCACCCAAGAGTTGTTATATGCGCCCTCCAGGTGGTATTCTTGCACCTGGTGAAAGCATAATTGCAACTGTGTTTAAGTTTGTGGAGCCACCGGAGAACAATGAGAAACCGATTGTTGATCAAAAAAGCAGNGTTAAGTTCAAAATCATGAGCTTAAAAGTGAAAGGCGAAATGGACTATGTACCAGAATTGTTTGAAGAGCAAAGGGATCAAGTAGCAGTGGAGCAAATTTTGGGTGTGGTTTTTTTGGACCCCGAACGCCCAAGCCCTGCCATGGATAAGCTTAAACGACAGCTAGCTGAGGCTGAGGCTGCACTGGAAGCAAGAAAGAAGCCCCAAGAGGAGACAGGTCCTCGCATAGCTGGGGAAGGACTTGTTATAGATGAATGGAAAGAAAGAAGAGAAAGATACCTGGCCAAGCAGCAGGTTGAAAGGGTTGATTCAACGCCCTTTTCCGGCGGACTGGTCGGCAACTGTGACGTCGACGACAGACGAAGGGGCCACGCTGACGATTCTTTCCGCAAAGTCATGTACTTCAATTGTTGGGGTCAGGGTTAGCTAGCTCACTCTGCTTTCCACCTTCTGTGTTGACTCACTGAGTCGGATCGATCCCAACCGAGTCTGTTATATTGTAACTGTGTTGGGGGAAGAGAGATGATGGTGGTCTAGCTTCTAGCTTTGCTCTTGTAAATTGTAACTTGTATATAACAGAATTGAATTAATTTCCCATTTACAGAGTAATTTATGACTTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	28907	32383	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022115.1	PF00635.21	Motile_Sperm	78	189	1.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.020
SRR1783600	control	6.087
SRR1783602	moderate drought stress	5.649
SRR1811619	moderate drought stress	5.971

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.759
DRR006520	Root Summer glycyrrhizin high producing strain	9.648
DRR006521	Root Winter glycyrrhizin high producing strain	9.671
DRR006522	Root Winter glycyrrhizin high producing strain	8.902
DRR006523	Root Summer glycyrrhizin low producing strain	7.362
DRR006524	Root Summer glycyrrhizin low producing strain	7.405
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.435
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.741

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.547
SRR2868004	Drought Stress (root)	5.700
SRR2967015	Control (root)	7.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.983
SRR9715740	Leaf	6.758
SRR9715741	Leaf	4.967
SRR9715739	Root	0.839
SRR9715742	Root	3.396
SRR9715743	Root	3.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.947
SRR8749028	MeJA induced 9h	2.596
SRR8749029	MeJA induced 9h	2.677
SRR8749030	Uninduced	1.857
SRR8749031	Uninduced	2.515
SRR8749032	Uninduced	2.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.694
SRR8400027	Control - Root	8.050