Gene detail

Gene detail information of Glyur000365s00022113

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20800.1	0	NAD(P)H dehydrogenase B4
NR	KHN41160.1	0	External NADH-ubiquinone oxidoreductase 1, mitochondrial [Glycine soja]
COG	YP_010384.1	2.00E-43	pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris str. Hildenborough]
Swissprot	tr\|Q9ST62\|NDB1_SOLTU	0	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (Precursor)
trEMBL	tr\|A0A072UKI3\|A0A072UKI3_MEDTR	0	NAD(P)H dehydrogenase B2 {ECO:0000313\|EMBL:KEH29603.1}

Sequence

Transcript Sequence

>Glyur000365s00022113.1
AAAAAAAACTTGACCAAACAGGCTTGCGTTTGGACAAACGTCCGTATAGGACGGAAAATCAAACACCAACATCCACGCGTCAAAGGCTGTGTTACGATGGGAAAAAGAAAATAGCTGAGCTGAGATTGAGAGAGGTCAGAAGTGGAAGCTGTTTGGTGTACTTTCCACATGACGGTTGCTTCCTTCTTCATCAGGGCCTCCAGGGCTCTCAACGGCTCCAATCTTCTCCTTCTCTGCACTCTCAGTGGTGGAGGCGTGGTGGCATACTCAGAATCACGATCAGAAGCTGAACGTCCTAATATTGATGCNAGTCAGCCCCAGAAAAAGAAAGTGTTGGTCCTTGGAACAGGATGGGCTGCGACCAGTTTCCTTAAGGGTTTGGATGCTTCATTATATGATGTTCAGGTTGTTTCACCTCGCAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCTCGGAGCATTGTAGAGCCAATCAGAAACATCATTAAAAAGAGAAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTGATTCTGCAAAGAAAAAGGTTTTTTGTCGGTCTAATATTGACAACTTAGTTGGAAGTGGTGAATTTTCTCTGGACTATGACTTCTTGGTTGTAGCAGTAGGGGCACAAGTAAATACTTTTAACACCCCCGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAAGATCAGACTGTCCGTGATAGATTGTTTTGAGAAGGCTGTTCTTCCTAATCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTTGTAGTTGGAGGAGGTCCAACTGGTGTTGAATTTGCTGCAGAGCTTCATGATTATATTGAAGAAGATTTAATCAAATTATATCCAACTGTTAAAGATAAAATGAGGATAACAGTGATTCAATCTGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAGAAGTTCACAAGAGATGGTATAGAAGTTCAAACAGGATGCCGGGTTGTGAGTGTTAATGACAAGGAAATTACAGTGAAGGTGAAATCAACAGGGGAGGTTTGCTCTGTTCCCCACGGATTGATTGTCTGGTCCACTGGTATTGCTACTCTTCCAGTTATAAGGGACTTTATGGAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACTGATGAATGGTTGCGAGTAAAGGGATGTGAAGATGTGTATGCCATTGGTGATTGCTCTTCAATAAATCAACGTAAAATCATGGATGATATAGTGGCCATATTTGAGGCTGCAGACATAAATAACTCCGGTACCTTAACTGTTGAAGAATTCCAGGATGTGATGGATGACATCTTCTTAAGATATCCTCAAGTTGAACACTATTTAAAGAGCAAACATAGATTTGATTTAACCGTTCTGTGGAAAGATCCACAAGGAAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAGCTGGCCCTTTCTCATGTAGATTCACAGGTGAAGACTCTGCCGGCAACTGCACAGGTTGCTGCCCAACAAGGCGCATATCTAGCTGGATGCTTTAACCGCATGGATCATAGTAAAGAGCATCCAGAAGGTCCTCGACGATTTACAGGATCTGGACATCATAGGTATAAACATTTTGGGCAATTTGCCCCGTTGGGTGGGGAGCAGACAGCCGCAGAACTTCCAGGAGACTGGGTTTCCATTGGTCACAGCTCTCAATGGCTTTGGTATTCTGTATATGCAAGTGATAATTTTTTCATGGAACATCTTGCTCTACCGTCGACTGGACAGTCAGAGAAAGATCGATCTTCTTATTTTGGATCAGGTGGTGGAGGTCTAGTGGCATATGCTGATGCAGGACCGGCACATAGTGATCATGTTGATCAGAACCCCAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTCTGAAAAGCATGAAAAACTCATCCTATGACATTCATGTGGTTTCACCACGCAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACTTGTGGCACAGTGGAGGCACGCAGCATCGTTGAACCGATCCGCAGTATCACCCGGAAGAGTGGTTTACATATTCAATTCAGTGAAGCTGAATGCTTTAAGATTGATTCCAAGAACCAAAAAGTTCACTGCCGTGCTGCTGGTCAAGACAAAAAGCTGGGTGGCCAACAAGAATTTTCCATTGATTATGATTACTTGGTAATAGCCATGGGAGCCCGTCCTAATACCTTTAACACACCTGGTGTTCAGGAGCATGCGTACTTCTTAAAGGAAGTGGAAGATGCTCTAAGAATCCGTCAACAAGTGATTAACCTTTTTGAGAAAGCAAGCCTCCCTTCTATACCAGTGGAGGAAAAGAAGAAACTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTATATGACTTTGTGCATGAGGATCTATCAAAATTGTATCCTTCTCTTACAGACCTTGCCAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTGAACATGTTTGACAAGAGAATTACAGAATTTGCTGAAAAGAAGTTCAAAAGAGATGGCATCGATGTGAAGTTGGGATCTATGGTTGTCAAAGTTAGTGAAAATGAAATTTCTTCCAAAGAAAGAGAAACTGGTCAAACTGTGACCATGCCTCATGGGATGGTAGTTTGGTCAACTGGCATTGGTGCTCGTCCTGAAATAGTTGATTTTATGAAGCAGCTTGGTCAGATTAATAGACGTGCGTTAGTCACTGATGAATGGCTAAGGGTGGAAGGAACTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGTAGAGTTATGGAAGATATAGCCGTGATATTCAGCAAGGCAGACAAGGACAATTCAGGAAGGTTAGATCTTAAAGAATATCAACAAGTTGTTGGCGACATTGTTGAGAGGTACCCACAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCACCTTGCTAAAGAAATCTGAGGAAAGCTCACTTTCAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTTGATTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGAGTCTATCTTGCTGACTGTTTCAATCGCATGGAGTTGTGTGAGATGTATCCTGAAGGCCCTCTAAGGTTTAGGGGAACAGGACGCCATCGGTTTCATCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTTGGTGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCATAGCACCCAGTGGCTGTGGTATTCAATATATGCAAGCAAACTAGTCAGCTGGAGAACGAGGGCTTTGGTGATAGCTGACTGGGGAAGGAGATTCGTATATGGGAGGGACTCAAGTAGAATCTGA

Protein Sequence

>Glyur000365s00022113.1
MTVASFFIRASRALNGSNLLLLCTLSGGGVVAYSESRSEAERPNIDASQPQKKKVLVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKRKGEIKFWEAECVKIDSAKKKVFCRSNIDNLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPNQSEEEQRSNLHFVVVGGGPTGVEFAAELHDYIEEDLIKLYPTVKDKMRITVIQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVVSVNDKEITVKVKSTGEVCSVPHGLIVWSTGIATLPVIRDFMEEIGQAKRHVLATDEWLRVKGCEDVYAIGDCSSINQRKIMDDIVAIFEAADINNSGTLTVEEFQDVMDDIFLRYPQVEHYLKSKHRFDLTVLWKDPQGNERKEIDIEGFKLALSHVDSQVKTLPATAQVAAQQGAYLAGCFNRMDHSKEHPEGPRRFTGSGHHRYKHFGQFAPLGGEQTAAELPGDWVSIGHSSQWLWYSVYASDNFFMEHLALPSTGQSEKDRSSYFGSGGGGLVAYADAGPAHSDHVDQNPKKKVVVLGTGWAGTSFLKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKSGLHIQFSEAECFKIDSKNQKVHCRAAGQDKKLGGQQEFSIDYDYLVIAMGARPNTFNTPGVQEHAYFLKEVEDALRIRQQVINLFEKASLPSIPVEEKKKLLSFVIVGGGPTGVEFAAELYDFVHEDLSKLYPSLTDLAKITLLEAGDHILNMFDKRITEFAEKKFKRDGIDVKLGSMVVKVSENEISSKERETGQTVTMPHGMVVWSTGIGARPEIVDFMKQLGQINRRALVTDEWLRVEGTDNIYALGDCATINQRRVMEDIAVIFSKADKDNSGRLDLKEYQQVVGDIVERYPQVDIYLKKNQMKDMATLLKKSEESSLSVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMELCEMYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYASKLVSWRTRALVIADWGRRFVYGRDSSRI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	15902	27123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005509 calcium ion binding

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022113.1	PF07992.9	Pyr_redox_2	54	370	5.80E-27
Glyur000365s00022113.1	PF00070.22	Pyr_redox	218	307	4.00E-13
Glyur000365s00022113.1	PF13202.1	EF-hand_5	379	403	0.00036
Glyur000365s00022113.1	PF07992.9	Pyr_redox_2	592	911	8.20E-33
Glyur000365s00022113.1	PF00070.22	Pyr_redox	759	841	2.20E-12
Glyur000365s00022113.1	PF13202.1	EF-hand_5	922	943	0.0023

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.922
SRR1783600	control	9.033
SRR1783602	moderate drought stress	8.643
SRR1811619	moderate drought stress	8.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.561
DRR006520	Root Summer glycyrrhizin high producing strain	14.707
DRR006521	Root Winter glycyrrhizin high producing strain	13.638
DRR006522	Root Winter glycyrrhizin high producing strain	13.271
DRR006523	Root Summer glycyrrhizin low producing strain	19.648
DRR006524	Root Summer glycyrrhizin low producing strain	19.491
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.488

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.919
SRR2868004	Drought Stress (root)	52.242
SRR2967015	Control (root)	49.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.941
SRR9715740	Leaf	15.992
SRR9715741	Leaf	23.255
SRR9715739	Root	3.003
SRR9715742	Root	13.967
SRR9715743	Root	11.743

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.584
SRR8749028	MeJA induced 9h	29.545
SRR8749029	MeJA induced 9h	22.053
SRR8749030	Uninduced	24.611
SRR8749031	Uninduced	28.684
SRR8749032	Uninduced	18.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.808
SRR8400027	Control - Root	38.252