Gene detail information of Glyur000364s00018062 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50670.1 | 9.00E-90 | OTU-like cysteine protease family protein |
| NR | XP_004491398.1 | 1.98E-126 | PREDICTED: ubiquitin thioesterase OTU1-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|I1JJ98|I1JJ98_SOYBN | 1.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00364 | 172771 | 176785 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13719 | OTU1, YOD1 | EC:3.1.2.- | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000364s00018062.1 | PF02338.14 | OTU | 49 | 144 | 5.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.012 |
| SRR1783600 | control | 17.550 |
| SRR1783602 | moderate drought stress | 19.832 |
| SRR1811619 | moderate drought stress | 19.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.606 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.121 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.623 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.298 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.719 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.287 |
| SRR2868004 | Drought Stress (root) | 36.823 |
| SRR2967015 | Control (root) | 26.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.534 |
| SRR9715740 | Leaf | 55.555 |
| SRR9715741 | Leaf | 33.746 |
| SRR9715739 | Root | 9.877 |
| SRR9715742 | Root | 10.875 |
| SRR9715743 | Root | 10.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.207 |
| SRR8749028 | MeJA induced 9h | 52.215 |
| SRR8749029 | MeJA induced 9h | 33.715 |
| SRR8749030 | Uninduced | 130.491 |
| SRR8749031 | Uninduced | 79.021 |
| SRR8749032 | Uninduced | 66.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.593 |
| SRR8400027 | Control - Root | 38.122 |