Gene detail

Gene detail information of Glyur000364s00018057

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25130.1	4.00E-96	peptide met sulfoxide reductase 4
NR	NP_001239979.1	5.37E-170	uncharacterized protein LOC100792638 [Glycine max]
COG	YP_006545856.1	7.00E-59	peptide-methionine (S)-S-oxide reductase [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9SEC2\|MSRA_LACSA	2.00E-122	Peptide methionine sulfoxide reductase
trEMBL	tr\|I1M6S0\|I1M6S0_SOYBN	1.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02705.4}

Sequence

Transcript Sequence

>Glyur000364s00018057.1
CTTTTGCATGCAGCGAGTGAAGCTTCTTCCTTTCTATCTCTCTCCAACCACAATTGAAGCCTTTCCCATTTCTCTCTCTTGTTCTCCCAACTCCCACTCTCCCTTGGGGTTGAAGATGAGAATTTGTGGAGCAGCAACCAGCAGCGGCTACAACACCACATCCAGCTCCTTTCTAGTGTTTGTTTCTTCTTCCCTCCCTAATCCTGCCAAAACCAAGTTCCTGCCCTCACTTTCTAGATTTTCTGTCAAGCGTTCTTGCTTCTTTTCACAAACCCGGCCCCGTACTGGTGTTAGCAAGCCCTCCATGAACCTGTTGAACAGACTTGGGTTTGGTAGCGCGAGGGCAGCAGAGAACATGGACTCATCCATTCCTCAGGGACCAGATGATGACATACCAGCACCAGGCCAGCAGTTTGCCCAGTTTGGTGCTGGCTGCTTTTGGGGTATCGAGTTGGCCTTCCAAAGGGTGCCTGGGGTGACCAAGACCGAGGTTGGTTACTCCCAGGGGTTTGTGCACAATCCAACCTATGAGGATATATGTACAGGGACCACAAACCACTCGGAGGTTGTAAGGATCCAATATGATCCCAAAGAATGTGGCTATGAAACTCTTCTTGATGCTTTTTGGGCTAAACATGATCCTACCACACTGAATCGACAGGGAAATGATGTGGGAACACAGTACAGATCTGGCATATACTACTACACACCTGAACAAGAGAAGGTGGCTAGAGAGTCTTTGGAACAAGTACAGAAGCAGTTGAACAGGAAGATTGTTACCGAGATCCTTCCTGCGAAGAAGTTCTACAGGGCGGAGGAGTACCATCAACAGTACCTTGCGAAAGGGGGCCGATTTGGCTTCAAGCAATCTACTGCCAAAGGATGCAATGATCCAATTCGGTGCTATGGTTAGTTGTTAAGAGTGAATTACCATCAAGGATCAGTGTGAACGGTTCTTTAGATGTTGAAAGTTTGATAGTGTTCTGTTAGTAAGTATTTGTTAATGTATATCAACAAAGTTTGTGCACGCTGTACTGGAGGTTGAAATTGGGCATATAGCCATAAATTCAGTTGTAGAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00364	139995	142984	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0030091 protein repair

GO:0055114 oxidation-reduction process

molecular_function

GO:0008113 peptide-methionine (S)-S-oxide reductase activity

GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000364s00018057.1	PF01625.16	PMSR	137	280	3.30E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.350
SRR1783600	control	63.480
SRR1783602	moderate drought stress	62.445
SRR1811619	moderate drought stress	61.901

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.399
DRR006520	Root Summer glycyrrhizin high producing strain	68.212
DRR006521	Root Winter glycyrrhizin high producing strain	83.389
DRR006522	Root Winter glycyrrhizin high producing strain	81.401
DRR006523	Root Summer glycyrrhizin low producing strain	66.695
DRR006524	Root Summer glycyrrhizin low producing strain	66.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	486.772
DRR006526	Leaf Summer glycyrrhizin high producing strain	484.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.673
SRR2868004	Drought Stress (root)	88.552
SRR2967015	Control (root)	90.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	368.452
SRR9715740	Leaf	566.321
SRR9715741	Leaf	302.988
SRR9715739	Root	38.050
SRR9715742	Root	45.474
SRR9715743	Root	37.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.479
SRR8749028	MeJA induced 9h	23.352
SRR8749029	MeJA induced 9h	25.959
SRR8749030	Uninduced	19.135
SRR8749031	Uninduced	17.718
SRR8749032	Uninduced	15.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.628
SRR8400027	Control - Root	69.121