Gene detail

Gene detail information of Glyur000364s00018054.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50670.1	1.00E-103	OTU-like cysteine protease family protein
NR	XP_004491398.1	1.49E-145	PREDICTED: ubiquitin thioesterase OTU1-like isoform X2 [Cicer arietinum]
trEMBL	tr\|I3T4E6\|I3T4E6_LOTJA	6.00E-145	Uncharacterized protein {ECO:0000313\|EMBL:AFK47388.1}

Sequence

Transcript Sequence

>Glyur000364s00018054.1
AACTCATTCATTTAATTTAATTNAATTCTGCGACGCATAAAATAACGGGAAAACGAGGAAAACCACTTCCATTTCCATTTCAACTACCAAACTTGAAGATTGTGTTGTATTAGATTCATTGATTCTATTCTTCTATTCCACGCCTACAAAGCTATCTTTTGCTTCCTATTCATTCTTGTTTGTTTTCAACCCAATTCCTCTATTCTACGGATCTGCATATTTTCCATTGTTACTAGTTATCTGCANTCTACACCATGGAAGGTGTTGTTGTGAGAAGAGTCATTCCTTCGGATAACAGTTGCCTCTTTAATGCAGTTGGATATGTTATGGATCGTGACCGAAACAAAGCTGCNGAGTTGAGACAGGTTATAGCTGCAACAGTAGCAAGTGATCCTGAGAAATATTCCGAAGCATTTCTTGGGAAGCCAAATGCAGAGTATTGCAACTGGATTCTTGACTCAGAGAAGTGGGGAGGGGCAATCGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACAACACGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGGGTGATGCTGATTTACGATGGTCTCCACTACGATGCATTAGCTATGTCTCCTGTTGAAGGAGCTCCAGAGGAGTTTGATCAGACCATATTTGCTGTCCAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTTTAAACTTTGTTAAAGACCAACAGAGGAAACGGAGCTACACCGACACTGCCAGCTTCACTCTGCGCTGTGGGGTATGCCAGATTGGAGTTATTGGTCAGAAGGAGGCAGTAGAGCACGCACAAGCAACTGGTCATGTTAACTTCCAGGAATATAGATGATGCACACTGAGAGACACAAACTTGTATGTGTAGTCTCAGTTGTGACTTGAATGAGCATCATTGGTGAAAGATAGTTGCTTCATTGCAGACTGTCAACTTCTTTTCTGTTTTACTCAAAAGTGATTAAACTGAATAATTTCTGCCTGGGAATTGTTGTAACAATGTGTTGTAATAGTCGTAGTTCCTTGGTCTCTATCCACAGTGATTCTAATTCAAAGAAACCCACGTCCAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00364	125899	129840	+

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13719	OTU1, YOD1	EC:3.1.2.-	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000364s00018054.1	PF02338.14	OTU	11	120	3.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.669
SRR1783600	control	12.075
SRR1783602	moderate drought stress	8.739
SRR1811619	moderate drought stress	9.394

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.936
DRR006520	Root Summer glycyrrhizin high producing strain	37.333
DRR006521	Root Winter glycyrrhizin high producing strain	35.761
DRR006522	Root Winter glycyrrhizin high producing strain	31.763
DRR006523	Root Summer glycyrrhizin low producing strain	40.632
DRR006524	Root Summer glycyrrhizin low producing strain	39.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.668
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.950

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.938
SRR2868004	Drought Stress (root)	52.403
SRR2967015	Control (root)	50.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.619
SRR9715740	Leaf	62.655
SRR9715741	Leaf	53.626
SRR9715739	Root	9.672
SRR9715742	Root	20.244
SRR9715743	Root	18.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.492
SRR8749028	MeJA induced 9h	35.383
SRR8749029	MeJA induced 9h	31.045
SRR8749030	Uninduced	54.304
SRR8749031	Uninduced	55.834
SRR8749032	Uninduced	38.324

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.706
SRR8400027	Control - Root	47.577