Gene detail information of Glyur000364s00018053 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20390.1 | 4.00E-58 | endoribonuclease L-PSP family protein |
| NR | XP_003617541.1 | 7.86E-104 | Ribonuclease UK114 [Medicago truncatula] |
| COG | YP_003269916.1 | 1.00E-38 | endoribonuclease L-PSP [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q94JQ4|RIDA_ARATH | 2.00E-74 | Reactive Intermediate Deaminase A, chloroplastic {ECO:0000303|PubMed:25070638} (Precursor) |
| trEMBL | tr|G7K8J9|G7K8J9_MEDTR | 3.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK44548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00364 | 117688 | 120073 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000364s00018053.1 | PF01042.16 | Ribonuc_L-PSP | 91 | 208 | 2.80E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.755 |
| SRR1783600 | control | 3.844 |
| SRR1783602 | moderate drought stress | 1.088 |
| SRR1811619 | moderate drought stress | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.251 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.370 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.919 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.268 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.178 |
| SRR2868004 | Drought Stress (root) | 8.156 |
| SRR2967015 | Control (root) | 12.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.585 |
| SRR9715740 | Leaf | 4.491 |
| SRR9715741 | Leaf | 1.071 |
| SRR9715739 | Root | 3.639 |
| SRR9715742 | Root | 0.171 |
| SRR9715743 | Root | 1.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.418 |
| SRR8749028 | MeJA induced 9h | 12.738 |
| SRR8749029 | MeJA induced 9h | 21.586 |
| SRR8749030 | Uninduced | 4.228 |
| SRR8749031 | Uninduced | 1.129 |
| SRR8749032 | Uninduced | 5.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.707 |
| SRR8400027 | Control - Root | 8.984 |