Gene detail information of Glyur000364s00018048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54940.2 | 4.00E-46 | Translation initiation factor SUI1 family protein |
| NR | KHN11920.1 | 2.76E-63 | Protein translation factor SUI1-like protein [Glycine soja] |
| Swissprot | tr|O82569|SUI1_PIMBR | 4.00E-58 | Protein translation factor SUI1 homolog |
| trEMBL | tr|G7K3H5|G7K3H5_MEDTR | 4.00E-63 | Uncharacterized protein {ECO:0000313|EMBL:AFK47392.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00364 | 95166 | 96289 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000364s00018048.1 | PF01253.17 | SUI1 | 39 | 117 | 1.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 74.388 |
| SRR1783600 | control | 77.661 |
| SRR1783602 | moderate drought stress | 90.653 |
| SRR1811619 | moderate drought stress | 95.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 213.148 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 214.569 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.328 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 385.630 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 409.013 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 156.411 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 159.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 198.105 |
| SRR2868004 | Drought Stress (root) | 134.887 |
| SRR2967015 | Control (root) | 180.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 193.072 |
| SRR9715740 | Leaf | 179.650 |
| SRR9715741 | Leaf | 236.335 |
| SRR9715739 | Root | 57.539 |
| SRR9715742 | Root | 164.892 |
| SRR9715743 | Root | 147.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.601 |
| SRR8749028 | MeJA induced 9h | 5.079 |
| SRR8749029 | MeJA induced 9h | 5.113 |
| SRR8749030 | Uninduced | 3.314 |
| SRR8749031 | Uninduced | 6.656 |
| SRR8749032 | Uninduced | 7.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 113.219 |
| SRR8400027 | Control - Root | 71.736 |