Gene detail

Gene detail information of Glyur000364s00018038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20475.1	0	MUTS-homologue 5
NR	XP_004491410.1	0	PREDICTED: DNA mismatch repair protein MSH5-like [Cicer arietinum]
COG	YP_004884298.1	5.00E-38	DNA mismatch repair protein MutS [Oscillibacter valericigenes Sjm18-20]
Swissprot	tr\|F4JEP5\|MSH5_ARATH	0	DNA mismatch repair protein MSH5
trEMBL	tr\|G7K3K2\|G7K3K2_MEDTR	0	DNA mismatch repair protein MutS {ECO:0000313\|EMBL:AET00534.2}

Sequence

Transcript Sequence

>Glyur000364s00018038.1
ATGGCGCCATTGCTCTCTACGGTTTACATGGCTTGCATACAGAATGGTCATAGAATAGGGGTTTCTTATTATGATTCCAGCCTTAGCCAACTTTATGTTCTTGAAGTTTGGGATGATGGTGACGGAGGTTTTCCGGTTATTGATCTAGTGAAATATCAATCAAACCCTTTGGTCATTTACACAAGCACTAAATGTGAAGAATCTTTCTTGGCTGCTCTGCAACGAAGTGATGGTGTAGCTGANTCTCCTACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCATAGATTAATTTACCTTCGGGTGGCGGGGATGGATGATGGATTAGATGTCAAGAAGAGGATTTACTTTTTGAGTTCCATGATGGACATGGNAAGTGAACTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTGTAGCAGAAATTTCACTAAATAACTTCCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGTCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATGAATAAGATATCTTTCTTTCTATGCTCAGAAGAACTCATTGCTTCCTTACGTGAAACCCTGAAATCTGTGAAGGACATCCCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCCATATGCACTAGCACTGATTGGGCAGCACTTCTGAAGAGTATCAGTGCACTGCTGCATGTAAACAAGATATTTGAAGTTGGAATTTCCGAAGGTCTTCAAGAAGAATTGAAGCACTTGAACTTAGATATTGTTGAGAAGGCAAGTTCATGCATAACAACAGAGCTTGCATATGTCTACGAGCTGATAATTGGTGTTATTGATGTAAATAGAACTAAAGAGAAGGGATATATGACATTGGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAGGAACTGCCAGAATTCCTGGAAGAGGTTTCATCATTGGAACTTGCACAACTCCCTGTTCTATGCAAGGACAAGCTTTTTTGTGATGCAGATGGAGAGACAAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGACAGTCTTCTAGGAGATATCTTTCATAAAATTCTAGATATGGAGAGGGCGATCACCAGAGACTTGTTTTCACGTGTNCTATTGTTTTCAACCCATTTGATAAAGGTGGCAGCTTTTGCAGCTGAACTGGACTGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATTAATATCATCACTGGTCCTAATTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTATAATTGTTTTTCTGTCCCACATTGGTAGTTTTGTGCCTGCTGGTGCAGCAACCGTGGGTCTGACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTCATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCCACTTCACGATCTNTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGCATTGGTCTGCTTGCTGGGACCATAAATCACTTTGTCACGTGTGATGAACCTCCAAAGTCTGAGCAGATTAAGTTCTACACAATGAGTATACTGAGGCCTGACGACAATTCCACACATATTGAAGACATTGTATTTTTATATAGGCTTGTCCCCGGGCATGCACATCATAGCTATGGTGTGCCTGACGAAATTATAAAAAGAGCAGCAGTTGTGTTGGACGCTGTTTCAAATAACAATTGTGTTGAGAGGTTATGCAATGAGAACATATCCGCTCGAGATCATCAATACAAGGATGCCATGGAGAAATTGTTGAAATTCGATATCGACAGAGGCGACTTAAACCTTTTCTTCGAGGGAATATTTCCTCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00364	18074	31297	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006298 mismatch repair

molecular_function

GO:0005524 ATP binding

GO:0030983 mismatched DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000364s00018038.1	PF05192.13	MutS_III	219	439	3.50E-07
Glyur000364s00018038.1	PF00488.16	MutS_V	437	627	5.90E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.665
SRR1783600	control	0.691
SRR1783602	moderate drought stress	0.991
SRR1811619	moderate drought stress	0.958

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.107
DRR006520	Root Summer glycyrrhizin high producing strain	1.897
DRR006521	Root Winter glycyrrhizin high producing strain	1.663
DRR006522	Root Winter glycyrrhizin high producing strain	1.651
DRR006523	Root Summer glycyrrhizin low producing strain	4.987
DRR006524	Root Summer glycyrrhizin low producing strain	4.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.700
SRR2868004	Drought Stress (root)	1.848
SRR2967015	Control (root)	1.843

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.036
SRR9715742	Root	0.250
SRR9715743	Root	0.095

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.008
SRR8749028	MeJA induced 9h	0.987
SRR8749029	MeJA induced 9h	1.044
SRR8749030	Uninduced	0.759
SRR8749031	Uninduced	0.521
SRR8749032	Uninduced	0.353

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.721
SRR8400027	Control - Root	1.700