Gene detail

Gene detail information of Glyur000364s00018036

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05920.1	3.00E-10	Domain of unknown function (DUF313)
NR	XP_003617553.1	1.75E-35	B3 domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q8RV83\|Y2172_ARATH	2.00E-10	B3 domain-containing protein At2g31720
trEMBL	tr\|G7K3I0\|G7K3I0_MEDTR	7.00E-36	B3 domain plant protein {ECO:0000313\|EMBL:AET00512.1}

Sequence

Transcript Sequence

>Glyur000364s00018036.1
ATGAGCGGTAACTTCTACTACTACTACTACTATTACTACATAAAGAGTGAGAAAAAAAAAGTCAACAAATTAGAAGCATCAAAGAAACACAATCACAATGGTGTTTCTAAGAAGAGCCTGAAAAGAAAAGCCAAGAAAAGAAGAACCAAGGCTCCATCATCAAAGAAACCAAAGAGCCAGAATAACAAGAATATTAATGTTGAGGAAGAGCAAGAACATCCTCAAGAATTGCCTGTGGCGGTTAAAGAAAGGATTGAAGAAATGGAGGGTGGTGATGCAAAGTTAGTGATCCAGAAGGAACTCACAAAGAGTGATCTAAACTCAAACAATGGTCGCTTCTCTATTCCAAAACGGAAGATTCGAGAGGANGCCAGAGATTTCCTAACACAAGAAGAGGAATCCTCATTGGATGTGCGAGAAAGGAAGAACAAAAGACTTGCCGGTATCTCGGTGTCTGTGTTGGATCCTAACCTTAGAATCTATGACAACATGTGTTTCAAGAAATGGGAGATGGAGACAACAGAGGTGTACAACATCACACGTGGATGGAATGACCTTGTTCGCGATAACCACTTGAAAGCCAATGACAAAGTGCAACTCTGAGGAATGCTTAAAGCAAACAACAGGAATGAGAAGCACAAGACGAAGAGTCTTAGTAAAAGCCATCTTCTTGGCACTGCTCTGCTTCTATCGGTATACTTCATAGCAAATTTCGTCGTGCCAGATTTTCTTACCAAGTTTTTCGGATTTGATAAAGTAAAAGAAGAACAGAAGGTTGATGATACAGATACAATAGAAGATAAATAGGACAGACACCCCAAAGTGATGAAGGAAGCAAGGCGAGAGGTCACAAATGAAGAAACGTGATTACTATAAAATGTGAGATGTGCGTTCAGGATGCTCGAACTACTACTGCGTGGTTGTATGAATTTGTCTTCATTGTATTGTTAGTCTGCATTCAGATTATAAAAGTCAATTGTGTTGCTCATTTCATTTAACACCCAAGTGGGATAGGATGGGAGGTGGTTAAGTTAATGAGCAAAAGGGGAAGAAAACAAATAAAATATCACTTGAGAGACTGAAACTATTAAATGCACAAAGCTATATTTTCAATTCCCTCTGATTAAATCAAAAAATAATAATCATGGAAGCATTCATTAAAAGTTGCTACAGAACTCAACAACCAAGTATTTGGAAAAAAGAATGAAACTTTACAGTTATCTGCTTAGAGGGGGAGCGGGGTATAAACATGATGAATATGAAAAAATTTTGGTTACATGGTGAATATGAAATTTGTTATTCAACTCTCAAATTAGTTTGAAGAGAAGGTTTGTCAGAAGGTGACGGGCTTCCAGGCCTAGGAGGCTTCTTTGAAAATAAAGATGACTTGCTGTCTAAGAAATTTGAGAAAGATTGCCGTGGCTTTTCTTCATCATTTTTCTGATCTTTTGGCACAGGCTTTTTCAATAGTTTATCTTTGCCACCGAAGATAAGGCTAAGCCTCTTAAACCGGCTCTTTGGTTCATCAGNAACTGCAGATGATTCTTCTGTCTGCTTCATCATCTTTAATGCTTCTTCGGGATTCAGTAACATTGTCTCCACCGATTCATATACCTGTGCAAAGATGTGGCCATTATATTTTCTATTGAATGATAGTACTATCAAATAGTTGCATATGAAAATCAACACCACCCAGTCTCACCAATTTACATTTTTCTTATGAATAAAAACTTTCAATTCAGAGGATTTTTTTTCATCCCCACAGGCTCACAGGTAGGGTTATCTTCCACAATGAGCTTGTGTGCTAAAAAAAAAAAAAACTAAACAGTTCTGGAAGGTGGGCTTGGTTAAAGTAAAAGGTCTAAGTTTCACATTATCAAGACTATGCTTTATAAGTTCATATAGTGAATGACACTTCAAAATAGGTGGATAAAGCAAGAATTTTCTCCACTAGGTTACACATTGTCATGCTTACCATTTCATTAAGGTATGAATCAATGCGAGATGCTTCGCAAGGAATTGGGAGATGCTATGTAACTTCATAAATAAGCCAGTCAAAGAGTACCCACCTGGACAAGGTCATCAACTTTCTCACTCAATTTGTTGCTTTGACATGTGGCAACTATGTAATCCTTGCAGTCATTGAACAACTTTGAGAAGTCACTGTTACTAGACAGCATAGGTTCAGCAATCGCAAATCCTAAACCAAGCTATACAATTAAGACCAAAGATTATGGTTAGAAAGGCATAAAAATGGTATAAGTATAACCATGTGCGGGGGTGGGGAATAGGATCAATTTTTATACTTACACCACTTAATAATTTTATGTAGAATATGAAANCCAATCTAACCGTTGAATCATGTGATACTTATCTTCATGATCATATAGTTCAAATTTTAGATAATTTGAAATTGATAGGTGTGTTATCTAATGGTGGACATTTACTTATATTAAAAAAAAACATATTATATGTTAAAATAAAGTAGTGCATTGAAGTATAAATTAGTTTTTGATTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00364	3766	8408	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000364s00018036.1	PF03754.8	DUF313	76	188	4.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.893
SRR1783600	control	2.723
SRR1783602	moderate drought stress	2.604
SRR1811619	moderate drought stress	2.611

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.656
DRR006520	Root Summer glycyrrhizin high producing strain	2.645
DRR006521	Root Winter glycyrrhizin high producing strain	1.237
DRR006522	Root Winter glycyrrhizin high producing strain	1.337
DRR006523	Root Summer glycyrrhizin low producing strain	2.067
DRR006524	Root Summer glycyrrhizin low producing strain	2.387
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.425
SRR2868004	Drought Stress (root)	2.192
SRR2967015	Control (root)	1.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.601
SRR9715740	Leaf	2.598
SRR9715741	Leaf	1.577
SRR9715739	Root	0.489
SRR9715742	Root	0.607
SRR9715743	Root	0.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.088
SRR8749028	MeJA induced 9h	5.451
SRR8749029	MeJA induced 9h	11.214
SRR8749030	Uninduced	9.282
SRR8749031	Uninduced	9.160
SRR8749032	Uninduced	3.814

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.115
SRR8400027	Control - Root	2.543