Gene detail

Gene detail information of Glyur000363s00015381.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37940.1	9.00E-69	AGAMOUS-like 21
NR	XP_004485623.1	1.69E-105	PREDICTED: MADS-box transcription factor 27-like [Cicer arietinum]
Swissprot	tr\|Q9SZJ6\|AGL21_ARATH	3.00E-85	Agamous-like MADS-box protein AGL21
trEMBL	tr\|G7IS85\|G7IS85_MEDTR	1.00E-105	MADS-box transcription factor {ECO:0000313\|EMBL:AES63546.2}

Sequence

Transcript Sequence

>Glyur000363s00015381.1
CAAAAGAGGAGGAGAAAATTTTGAGAAGAAACCCTAGTGAGTTCAGTTTTGTCCTTTGACTAGAGATCGATGGGGAGAGGAAAGATTGCCATTCAAAGGATTGACGATACGACTAGCCGGCAAGTTACTTTTTCCAAGAGAAGAAAAGGGTTTCTGAAAAAAGCTAGAGAACTATCCATTCTTTGTGATGCAGAAATTGGATTGATTGTGTTCTCTTGCACTGGCAAGATTTATGACTATGCAAGCACTAGCATGAAATCTGTTATTGAGCGTTATAACAAGTTAAAAGAGGACCATCATCAGCTAATGAATCCTGCTTCCGAAATCAAGTTTTGGCAAACAGAAGCAGCAAGCTTGAGGCAACAATTGCAGCACTTGCACGAATGCCACAGGCAATTGATGGGCGAAGAAGTTTCTGGTTTGAGTTTTAATGAGCTACNGGANGTAGAAAATCAACTGGAGATGAGTTTGAAGAGCATTCGCATAAGAAAGGACCAAATTTTTAGTGATGAGATCAAAGATTTACACGGAAAGGGACGCCTCAGCCATCAAGAAAACGAAGAACTTCATAAGAAGATAGACCTCATCCGTAAGGAAAATGCAGAACTACACAAGGTTATTGGAGCAAGGAGTACGGAAGATATAGTTGAGCCAATCAGTCTCCAGCTAAGGCAGCCACAACCCCAACACAGTGAACAACCAGCTCCAACCAAATCAAAAAATCTGGGGTACGGTATTCCCTCAAACATGAAGATCTAAAACATGCATGCATACAGCTTATTTTATCCTGAATTAATTTCAGTATAAACTAATCAAATAANGTATGCAACAAAATTGCACGCACTAGATTTCAGCTGCGCGCATTATTAGTTAAAACTGCTCGATATTATATATAATCAGGTTGGCTTTTCATTTGCTGATGACAAGTTAGCCTCGACCGACAGAATTAGTTACCAAAATCAGAGATTTCAACAACTTGTCCCAATTAATATTGGTGTCATGCATATGCGTCTTTCNGTGTGGGATCATGTCATATATGTGCTTCAAGAACCGTAACTAGCTAGCTGTTCCATTCAACTATACAATAATCAAAGCACGGTATGAGATGATCGATGATGATGATCTATCCAGAAACTTTACGGTTGCTACAATCGGAGCGTAATGATTACTACCCCGGCCTGTAATTTTTATGCAATAAAGGATATCATCTTCATTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	174343	180050	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015381.1	PF00319.13	SRF-TF	10	59	1.30E-22
Glyur000363s00015381.1	PF01486.12	K-box	81	171	3.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.090
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.125
SRR1811619	moderate drought stress	0.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.346
DRR006520	Root Summer glycyrrhizin high producing strain	0.348
DRR006521	Root Winter glycyrrhizin high producing strain	0.182
DRR006522	Root Winter glycyrrhizin high producing strain	0.261
DRR006523	Root Summer glycyrrhizin low producing strain	3.247
DRR006524	Root Summer glycyrrhizin low producing strain	3.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.800

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.653
SRR2868004	Drought Stress (root)	0.736
SRR2967015	Control (root)	0.295

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.110
SRR9715740	Leaf	2.439
SRR9715741	Leaf	3.208
SRR9715739	Root	0.000
SRR9715742	Root	0.101
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.873
SRR8749028	MeJA induced 9h	4.763
SRR8749029	MeJA induced 9h	2.302
SRR8749030	Uninduced	5.977
SRR8749031	Uninduced	4.013
SRR8749032	Uninduced	0.908

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.157
SRR8400027	Control - Root	0.213