Gene detail

Gene detail information of Glyur000363s00015360.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37850.1	6.00E-47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	AES90525.2	1.01E-160	helix loop helix DNA-binding domain protein [Medicago truncatula]
Swissprot	tr\|Q9T072\|BH025_ARATH	1.00E-61	Transcription factor bHLH25
trEMBL	tr\|G7JTZ1\|G7JTZ1_MEDTR	4.00E-161	Helix loop helix DNA-binding domain protein {ECO:0000313\|EMBL:AES90525.2}

Sequence

Transcript Sequence

>Glyur000363s00015360.1
AAGCTGCACTATGGGGCATAGTACCCTCACATTAGTGAGGATCAGCAACACTGAAAGCTGCCACGTCTGTTGATGAGATATTATTACCTTGAGCTCTTTTGATTGCAAAGTTATTTTTCTTATGGAGATTTCATACATCAGAGGGTTACCTGATCAGGAAATAATGGAGGATCCTTTCTCTCTCCATCAGTGGCACTTGAGCTCTATTGATGAGTCTAGCTTCCTGCCAATAGCTGCTGCTTCTGGAGAGACTTTACAACACAATTCACTCAATTATCCAAACTTCAACCCCAGAACTTGGGTGGAAGAAAGAACCACAAAACATGTCAAAAACAACAGCTGGAACACCAGCAAAACNGCTCAGGCATCAGAGACACAATTTGTTTCTTGCCCAAATCTTCTTTCATTTGTGGACTCAAATCACATGAATCATCCTAAGGATGTTGAGATGGTTTGTCCTAAAATCAATTGCACAATTCCNTCAGACATGATCTCTCAAGGAATCTTGGAGAATCAAAACTATGTCAAAACTATGTCTTCACGTCCTAAACTCTCTCAACCTCAAGATCATATAATAGCTGAGAGAAAGCGGCGAGAGAAGCTCAGCCAGCGATTCATTGCTCTATCTGCCCTTGTTCCTGGATTACAAAAGATGGACAAAGCTTCTGTTCTTGGAGATGCCATCAAGTACTTGAAGCAATTGCAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAGAACATGAAGAAAAACGTAGAATCTGTGGTAGTTGTGAAGAAATCTCAACTATCCAATGATGTTGAAAACTCTTCTTCAGAATCTGGGTGTCCCTTTGACGTGGAACTGCCTGAAATTGAAGCACGATTTTGTGATAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGAGCAAAGGAGTTGTAGAAAAAGCAATCCATAAAATTGAGAAACTCCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGGAGCTGTGCCCTTGATATAACAATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATTTTGTGAGAAAACTACGCTCAGCTTTTACATCTTTCATGTGAGGACNTTCCTTTAGTTCATATTAAACAGAACAGAAGACCCCAAAAGCATAAGAAGAATAGGAGTTACTGTCAACTATATATATACCAGTTCAAAGTTTCAGTTCTTCAGTAATATTTCTGCTGACAAGGCCTGTAATGTCTACCATTTCATCCACACCAAGCATGCTCATGTGGTTCATTTGCGAGAGGGTTTTTCTGGCTATATTTTCCTTTTTTGCATGGTCAACGTGTTGACCATGTTAGGGCTACCCACCTGTTTCAACGATGACTATGCAGGAGGTTATTAATTTTTTGCAGGAGGTTGAACTTTGTCCCTCTTTTACCTAAAATCTTATAAAAGGGGCATTGGATTTCTGGGTGTTTGTGACAAACAGGCCTTTGTCTTGTGAGACTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	56777	59222	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015360.1	PF00010.21	HLH	148	195	3.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.134
SRR1783600	control	6.217
SRR1783602	moderate drought stress	8.480
SRR1811619	moderate drought stress	8.395

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.347
DRR006520	Root Summer glycyrrhizin high producing strain	2.421
DRR006521	Root Winter glycyrrhizin high producing strain	0.523
DRR006522	Root Winter glycyrrhizin high producing strain	0.507
DRR006523	Root Summer glycyrrhizin low producing strain	3.113
DRR006524	Root Summer glycyrrhizin low producing strain	3.256
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.143

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.195
SRR2868004	Drought Stress (root)	2.458
SRR2967015	Control (root)	1.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.915
SRR9715740	Leaf	9.806
SRR9715741	Leaf	15.774
SRR9715739	Root	1.570
SRR9715742	Root	4.358
SRR9715743	Root	4.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.469
SRR8749028	MeJA induced 9h	15.375
SRR8749029	MeJA induced 9h	28.813
SRR8749030	Uninduced	14.865
SRR8749031	Uninduced	4.353
SRR8749032	Uninduced	2.622

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.252
SRR8400027	Control - Root	7.322