Gene detail

Gene detail information of Glyur000363s00015359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09660.1	4.00E-172	peroxisomal NAD-malate dehydrogenase 2
NR	AAO27260.1	0	putative malate dehydrogenase [Pisum sativum]
COG	NP_462269.1	4.00E-109	malate dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
Swissprot	tr\|P46488\|MDHG_CUCSA	0	Malate dehydrogenase, glyoxysomal (Precursor)
trEMBL	tr\|Q5JC56\|Q5JC56_PEA	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}

Sequence

Transcript Sequence

>Glyur000363s00015359.1
TGTCAACCTCTTGGTTCCCATGCATTATTCACGTTTATATTTTATCCATTCATTTTATTTTCTGTTTATATTCTTTTGGCACCCTCGTTTGGTTTTCCCGTTTTTCACCCCATACATAAGCAGAACTCTTCAACGTCAGCACTACACACTGCTTCTCCCTCTGTCTCTCAAGTAAAGCATAGAAATGGAAGCACAAGCAGGAGCCAATCAACGCATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTCCAGGAAGGAGGTGATGTTCTTCTTGAGAGAGGTAACTGCAGAGCAAAAGGGGGTGCACCTGGATTCAAAGTAGCAATCTTGGGTGCTGCTGGGGGAATTGGTCAACCCCTTGCTTTGCTGATGAAGATGAACCCTTTGGTCTCAGTTCTTCATCTTTATGATGTTGTCAACTCCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACTGGTGCTGTGGTTCGTGGCTTTCTGGGGCAGCCACAACTTGAGAATGCACTCACCGGCATGGACTTAGTAATCATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACAAGGGATGATTTATTTAAAATAAATGCTGGAATTGTGAAGACCCTTTGTGAAGGAATTGCCAAGTGCTGCCCCAATGCAGTTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGGCAATTGCTGCGGAGGTTTTCAAGAAAGCTGGTACGTATGACCCAAAGCGACTGCTAGGAGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGGGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTTGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACCAATCGCATCCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGTGCTGGTTCTGCAACACTATCAATGGCATATGCAGCTGCCAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGGGTGGTGGAGTGTGCTTTTGTGGATTCTCAGGTTACGGAACTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGGTGGAGCAGAAGAGATATATCAACTGGGTCCCCTGAATGAGTATGAGAGGATTGGGTTGGAAAAAGCAAAGAGAGAGTTAGCCGGAAGCATTCAGAAGGGAATNGACTTCATCAGAAAATAAGTCAGATCAGGAAAAACTAGTCTTTGTTTCTTTGCTATAAAGAACTTGTGTAATACTTACTTCCCTCTGTTCATAGTGGATTTTTCATAAGAATAGTACTCTAAACTGAAGCTGAAATCTTTACACCCCCCCTCTCTCTTCACTTATATGGCTAATTTATATCAGTCAGTGCTTAGCCTTGATGCAATGGCTAAGGTACTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	53218	56285	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00026	MDH2	EC:1.1.1.37	Carbon metabolism	map01200
			Citrate cycle (TCA cycle)	map00020
			Pyruvate metabolism	map00620
			Glyoxylate and dicarboxylate metabolism	map00630
			Carbon fixation in photosynthetic organisms	map00710
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006108 malate metabolic process

GO:0019752 carboxylic acid metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0016491 oxidoreductase activity

GO:0016615 malate dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060 L-malate dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015359.1	PF00056.18	Ldh_1_N	46	188	2.20E-46
Glyur000363s00015359.1	PF02866.13	Ldh_1_C	190	354	1.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.328
SRR1783600	control	7.372
SRR1783602	moderate drought stress	7.740
SRR1811619	moderate drought stress	7.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.835
DRR006520	Root Summer glycyrrhizin high producing strain	8.688
DRR006521	Root Winter glycyrrhizin high producing strain	4.827
DRR006522	Root Winter glycyrrhizin high producing strain	4.964
DRR006523	Root Summer glycyrrhizin low producing strain	6.493
DRR006524	Root Summer glycyrrhizin low producing strain	6.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	238.889
DRR006526	Leaf Summer glycyrrhizin high producing strain	238.195

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.033
SRR2868004	Drought Stress (root)	23.063
SRR2967015	Control (root)	25.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	346.550
SRR9715740	Leaf	424.642
SRR9715741	Leaf	282.658
SRR9715739	Root	33.118
SRR9715742	Root	16.787
SRR9715743	Root	20.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.793
SRR8749028	MeJA induced 9h	3.618
SRR8749029	MeJA induced 9h	7.379
SRR8749030	Uninduced	1.991
SRR8749031	Uninduced	1.644
SRR8749032	Uninduced	5.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.755
SRR8400027	Control - Root	31.356