Gene detail

Gene detail information of Glyur000363s00015358

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58440.1	0	FAD/NAD(P)-binding oxidoreductase family protein
NR	AHY94896.1	0	squalene epoxidase [Astragalus membranaceus]
COG	YP_004346032.1	1.00E-95	Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprot	tr\|O48651\|ERG1_PANGI	0	Squalene monooxygenase
trEMBL	tr\|A0A075DZG2\|A0A075DZG2_ASTME	0	Squalene epoxidase {ECO:0000313\|EMBL:AHY94896.1}

Sequence

Transcript Sequence

>Glyur000363s00015358.1
CAACCACACAAACGTGAGAAATAAACAAAAGAAAGAGAAAGCATATAAATAATATCAGGGGTAGGTAGGTAAGTGAATCCAGATTTATTTACAACNCTTTGCCCCTATAAGAAGAAAAGGAAGGCAGGCTAATAGTAGCAGAAGTAACACGTCCAAAGTCACACACAAACAGCAACAAAGAATTTCCAAGAAACTAGAGAATTAGCTNTCTCATTTATTTACCACTATCATTCTCATTGTTCTAATTAAGCATCTTTAACAAGCCCAGTTTCAGCACAGAAATATCTTGGAGATGGATTATCAGTATATTCTGGGAGCGATTCTGGCTTGTAGTTTGGCCTTTGTGTTTGTTCTATACAGTTTAGCAGAAAAGAGGAAGGCCACAGGCACAGGTTTGAGTTCAAGTTCAATACATGTAAAAAGTAATGGGTGTGCAAAGACATCAGAAAATGGAATATGCCCACAAGAGGCTTCAGGAGGTACTGACATCATTATTGTTGGTGCTGGGGTTGCTGGTTCTGCCCTTGCCTACACACTTGGAAAGGATGGGCGGCGAGTACATGTCATTGAAAGAGACTTGAGCGAACCTGACAGGATTGTGGGTGAATTGCTACAACCTGGGGGCTATCTGAGGTTACTTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAACGGGTCTTTGGCTATGCTCTCTATAAGGATGGGAAAAATACCAAGCTGTCATATCCCTTGGAAAAATTTAACTCTGAAATTTCTGGAAGAAGCTTTCACAATGGTCGTTTCATACAGAAAATGCGAGAAAAGGCTTCATCTCTCCCAAATGTGAAATTAGAACAAGGTACTGTCACATCTTTGCTTGAAGAAAATGGAACCATCAAAGGGGTGAACTATAAAACAAAGAGTGGACAAGAGTTCATAGCAAAGGCTCCTCTCACCATAGTATGTGATGGTTGCTTTTCTAACTTGAGGCGTTCTCTTTGCAACCCCAAGGTGGAGGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTGGGTGATCCTTCACCCATTTTGTTTTACCCCATCAGTAGTACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTGCCTTCCCTTGGTAATGGTGAAATGGCACATTATTTGAAGACTGTGGTAGCTCCCCAGGAAATTGTATATGTTCAGGTTCCCCCGGAGCTGTATGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATGAGAAGCATGCCAAATAGAAGCATGCCAGCCTCACCTTATCCCACACCTGGGGCCCTTCTGATGGGAGATGCCTTCAACATGCGTCACCCTTTAACAGGAGGAGGAATGACTGTGGCTTTGTCTGACATTGTTGTGCTAAGGGATCTACTTAAACCTCTACGTGATCTGCATGATGCTTCTGCTCTCTGCAAATACCTTGAATCATTCTACACCCTACGCAAGCCAGTGGCGTCAACAATAAACACATTAGCTGGTGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTCGATTATTTGAGCCTTGGAGGAGTTTTCTCAGAGGGACCAACAGCTCTACTCTCAGGTCTAAATCCTCGTCCAATGAGCTTGGTCCTCCACTTCTTCGCGGTGGCTATATACGGTGTTGGCCGCCTGCTCATACCATTTCCTTCTCCAAAACGATTGTGGATTGGAGCTAGATTGATTTCAGGTGCATCTGGTATCATTTTCCCCATTATCAAGGCTGAAGGAGTGAGACAAATGTTTTTCCCAGTAACTGTGCCAGCATACTACAGAGCACCTCCTGTCCATTAGCATATTACAGTAGGAAAAGGCATGGAGACTATTTGCCAAAAAGAATGATATGGCAGACTCCATTCCATAATTAGGAAAATGAGTGGTGCAAATTGNAACCTGTATTATTGTGCTATAATTTTTTGTTCCTTTAAGAAAATAAAGTTTCTGGATATGGGACAAAAATAATTCCAAAACCAAGCTTCCAAGCATCATAGTGCAAAAATGCTATGCTTTGTCTTCATTGCAAGGTCACTTCTTTTTGTGGCTACTAGTATGTTATTGCTACTAGTATGGTATTATACAGTGCAGAAAGATGTGGTTGTAGTGTGACAATTGAAGATACTAAGAAGGCCACACAATGGGAGATAGTATTGTATTTGTCAGAGATCATATATCTGCTTAATTTAGAAAATAATTGGACTCTTTTTAAAATGGGAAGATATTTATTGTAAACCTGTATTTCACTATATTCACTTTCATTAATGACCTTGAACTTCAGAACTCAATAATCATCCGCAGTTAAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	43480	47756	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00511	SQLE, ERG1	EC:1.14.14.17	Steroid biosynthesis	map00100
			Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004506 squalene monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015358.1	PF13450.1	NAD_binding_8	68	94	1.90E-05
Glyur000363s00015358.1	PF08491.5	SE	214	493	1.40E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.121
SRR1783600	control	42.502
SRR1783602	moderate drought stress	13.218
SRR1811619	moderate drought stress	13.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.494
DRR006520	Root Summer glycyrrhizin high producing strain	16.408
DRR006521	Root Winter glycyrrhizin high producing strain	0.045
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	2.313
DRR006524	Root Summer glycyrrhizin low producing strain	2.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.957
DRR006526	Leaf Summer glycyrrhizin high producing strain	107.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	129.701
SRR2868004	Drought Stress (root)	55.377
SRR2967015	Control (root)	47.196

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	191.359
SRR9715740	Leaf	202.616
SRR9715741	Leaf	179.898
SRR9715739	Root	23.471
SRR9715742	Root	80.296
SRR9715743	Root	66.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.457
SRR8749028	MeJA induced 9h	1.404
SRR8749029	MeJA induced 9h	0.823
SRR8749030	Uninduced	0.910
SRR8749031	Uninduced	0.568
SRR8749032	Uninduced	0.284

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.770
SRR8400027	Control - Root	83.728