Gene detail

Gene detail information of Glyur000363s00015356.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33680.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004504888.1	0	PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Cicer arietinum]
COG	YP_007684.1	5.00E-162	L,L-diaminopimelate aminotransferase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q93ZN9\|DAPAT_ARATH	0	LL-diaminopimelate aminotransferase, chloroplastic (Precursor)
trEMBL	tr\|G7JTY4\|G7JTY4_MEDTR	0	LL-diaminopimelate aminotransferase {ECO:0000313\|EMBL:AES90518.1}

Sequence

Transcript Sequence

>Glyur000363s00015356.1
CATAAAAAGGGTCTGTCAACCGGGAAAATACTATTTTATTGATAGGCACTCCATCAATCAGTAGGGTTTGTAGCAGCATATATGCTGTTATTAGTTATTACAACTTGAAAATACTCAACGCCGCAGCTCTGTAGTTTCAATCCACTGACCTTCTCCACTCTCCACTCTTTCCCTTCTCATTTCCAATCCAAAATGTCTATTACCCAAAACCTCACCACTTCAATCTCTTCCTCCTCCTCTGCTTTCTTAGCTCCCTCCACCTTCAATTCTAGGAGTCAGGTGTCATTGCCTGCGAAGAGAGTGAGCATTTGTAAATGCGTTGCGGCACCCCAAGAAGCTGAGACTGCCTACAAGACAAGGGTCTCTCGCAATGAAAACATGGGTAAACTTCAAGCTGGCTATCTCTTTCCTGAGATTGCTAGAAGAAAGTCTGCACACTTGCTTAAGTACCCTGATGCAAAAGTAATAAGCCTTGGAATTGGTGATACTACTGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAGATCACATGCATTATCAACTGTGGAAGGATATAGTGGTTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACCATGATCTTGGCATTGAGGAAGATGATATATTTGTCTCGGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCAAATGTAAAAATGGCTGTGCAAGATCCATCATACCCGGCATATGTAGACTCAAGTGTAATTATGGGCCAGACCGGCTTCTACCAGAAGGATGTTGAGAAGTTTGCAAACATTGAATACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAGGAACTGACCCGACTAGTTAAGTTTGCTAAGGACAACGGATCTATAATAGTCTATGATTCCGCATATGCTATGTATATTTCTGGTGACAACCCACACTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCATTGAGACTGCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGACTGGGTTGGACCGTGGTTCCAAAGCAGTTACTGTTTTCTGATGGATTTCCTGTTGCCAAGGACTTCAACCGCATTGTAAGTACTTGTTTCAATGGCGCGTCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGCCTTAAGGCTATGCGAGAGGTTATTGGATTCTACAAAGAAAATACTAGCATAATAGTGGAGACGTTTGATTCTCTTGGGTTCAAAGTCTATGGAGGGAAAGATGCACCATATGTGTGGGTCCATTTCCCAGGCCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTTACAACCCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTATCAGGGTTAGTGCCTTTGGTCACAGGGAAAATATCTTGGAGGCCTGCAGAAGATTCAAGCAGCTATACAAGTGAATTTAAGAATATCTATCTCATTGGTTCTCCAGCAATGTGAGAGAGAACATGTTATTGGTTTCTATGACTTGTGGGGCTGTTTCTTTTGAATAATGCAATTATTTTTCCTTAGAACTTAGACTAAGGTGTAAAGGCTGGTTATCAATTGAGAACGTTTATTTCTGGTATTATTTTCCTTTTAAAAATCTTTGTATTATCCACCTGGAATCTGCAGCAGCACATCTTAGATGATGTTATATGTCTTTGTATGTTTCTATGGAATGTCAGAAATGTAGTAACTCAACATGGGTAACTGATTTTCCGTGAGAAAGCTCGCAGGTCTCAATTCACAAGTGCGTATGGTTTTGTTAGTGGCTCCAGCAGTTTCGGCCAAAATTTTTCACACTTGAAACAATTCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	31407	37338	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10206	E2.6.1.83	EC:2.6.1.83	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009089 lysine biosynthetic process via diaminopimelate

molecular_function

GO:0003824 catalytic activity

GO:0010285 L,L-diaminopimelate aminotransferase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015356.1	PF00155.16	Aminotran_1_2	90	454	4.60E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.519
SRR1783600	control	54.759
SRR1783602	moderate drought stress	30.007
SRR1811619	moderate drought stress	30.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.838
DRR006520	Root Summer glycyrrhizin high producing strain	42.472
DRR006521	Root Winter glycyrrhizin high producing strain	13.357
DRR006522	Root Winter glycyrrhizin high producing strain	13.063
DRR006523	Root Summer glycyrrhizin low producing strain	33.400
DRR006524	Root Summer glycyrrhizin low producing strain	33.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.449

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	174.885
SRR2868004	Drought Stress (root)	102.522
SRR2967015	Control (root)	88.889

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.980
SRR9715740	Leaf	59.654
SRR9715741	Leaf	66.893
SRR9715739	Root	37.049
SRR9715742	Root	65.612
SRR9715743	Root	57.215

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.546
SRR8749028	MeJA induced 9h	47.953
SRR8749029	MeJA induced 9h	47.029
SRR8749030	Uninduced	11.774
SRR8749031	Uninduced	8.521
SRR8749032	Uninduced	7.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.119
SRR8400027	Control - Root	72.894