Gene detail

Gene detail information of Glyur000363s00015351.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50090.1	2.00E-116	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NR	XP_003608318.1	0	Branched-chain-amino-acid aminotransferase [Medicago truncatula]
COG	YP_004196118.1	2.00E-77	branched chain amino acid aminotransferase apoenzyme [Desulfobulbus propionicus DSM 2032]
Swissprot	tr\|Q9LPM9\|BCAT6_ARATH	2.00E-156	Branched-chain-amino-acid aminotransferase 6
trEMBL	tr\|G7JT01\|G7JT01_MEDTR	0	Branched-chain-amino-acid aminotransferase {ECO:0000256\|RuleBase:RU004517}

Sequence

Transcript Sequence

>Glyur000363s00015351.1
ATGGCACCCCCTTCTATATTAGGGAACTGTGAAGACGGTTCTGGAAGTGTTACAGCTACAGGTGAAAATTGTGCTGACATCAATTGGGAAGGACTAGGATTTGTTCTGGTTCCAACAGATTACATGTATGTCATGAAATGCTCAAAAGGAGAAGGGTTTTCACAAGGAATCCTCATTCGCTATGGGAACATAGAGCTTAGCCCTGCTGCTGGGATCTTGAATTATGGACAGGGAATCTTTGAGGGGCTAAANGCGTATAGGACTAAAGATGGGCGTATCCTTCTGTTCCGGCCNGAAGAGAATGCTATGCGCATGAAGNTAGGGGCAGACAGATTGTGTATGCCATCCCCATCCATTGAGGTGTTTGTTAATGCTGTAAAGCAGACAGTTCTTGCCAATAAACGTTGGGTGCCTCCTACAGGGAAAGGGTCGCTTTATATTAGGCCATTGCTCATGGGAACAGGAGCTTTGTTAGGTGTGGCACCAGCACCTGAGTACACATTTCTCATTTATTGCTCTCCTGTCAGTAGCTACCACAAGGGAGGAGCACTAAACTGGAAAGTTGAGGATAAGTTGCATCGAGCAATATCTGGCAGCGGTGGAACCGGAGGAATCAAGAGTGTTACCAATTATGCCCCAATTTATAGTGCAACCACTAGTGCAAAGGCTAATGGATTCTCCGATGTTCTGTTCTTGGACTCAGCAACTGGAAAGAATATAGAGGAGGCTTCTACAAGCAATGTATTTGTTGTGAAGGGAAATGCGATCTTCACTCCGGCATTAGANGGAGCCATCCTGCCTGGGATCACACGAAAAACCATCATTGACATTGCCACTGATTTGGGTTATCAGGTCATGGAANGTGCCATATCAGTGGAGGAAATGCTAGGTGCTGATGAAGTGTTCTGCACAGGAACTGCAGTGGTTGTCAACTCTGTTGCATCTGTAACCTATAAGGAAAAAAGGGCTGAATACAAAACAGGACCAGAAACATTGTCTGAGAAACTACGCAGCATACTGGTCGGAATTCAAACAGGGTGTGTTGGGGACAAAAAGTCATGGACAGTACGAGTGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	11870	14200	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00826	E2.6.1.42, ilvE	EC:2.6.1.42	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280
			Valine, leucine and isoleucine biosynthesis	map00290
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009081 branched-chain amino acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004084 branched-chain-amino-acid transaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015351.1	PF01063.14	Aminotran_4	96	327	7.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.550
SRR1783600	control	3.649
SRR1783602	moderate drought stress	10.015
SRR1811619	moderate drought stress	10.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.099
DRR006520	Root Summer glycyrrhizin high producing strain	0.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.102
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.820

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.690
SRR2868004	Drought Stress (root)	4.958
SRR2967015	Control (root)	7.008

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.887
SRR9715740	Leaf	0.175
SRR9715741	Leaf	0.765
SRR9715739	Root	27.345
SRR9715742	Root	14.949
SRR9715743	Root	16.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.263
SRR8749028	MeJA induced 9h	0.426
SRR8749029	MeJA induced 9h	0.113
SRR8749030	Uninduced	19.515
SRR8749031	Uninduced	72.731
SRR8749032	Uninduced	37.656

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.197
SRR8400027	Control - Root	59.195