Gene detail

Gene detail information of Glyur000362s00017680

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65560.1	2.00E-115	Zinc-binding dehydrogenase family protein
NR	XP_004489123.1	1.49E-178	PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X2 [Cicer arietinum]
COG	YP_004965647.1	2.00E-71	putative oxidoreductase [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q9SLN8\|DBR_TOBAC	5.00E-132	2-alkenal reductase (NADP(+)-dependent)
trEMBL	tr\|I3SE71\|I3SE71_MEDTR	2.00E-176	Uncharacterized protein {ECO:0000313\|EMBL:AFK38563.1}

Sequence

Transcript Sequence

>Glyur000362s00017680.1
AAAAAGGGGAAGCGACTTGCGAGTTGCGAGCACGTGCCTTCTTCTACTGCCACCTCTATTCAATATTTATTGAACATTATTGACCCAAAACTCCGTCCGTACATCAGTGACGTGCTTAATTTCCATTCCATAGGTGGCTGCCTCCTTCAATTCAATTCAATTCAATTCAATTCAATTTAATTTCAACTGTTCAGTAGTTTTGCAACTTGCAATTGGGGGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGATCGATATTCGATCTCCAAAATGGCAGAAGAAGTGGAAAACAAGCAGGTGATATTCAAAGGATACATTGATGGAGTCCCCAAAGAGAGCGATATGCAATTCAAGCTCTCCAGAACCCGACTCACCCTTCCCTCAGGATCAGCATCAGGAGGTCTCCTCGTCAAGAATCTCTATCTCTCTTGTGACCCTTACATGCGCGGTCGCATGCGTGATTTCCACGGCTCTTACATTCCCCCCTTCGTTCCTTCCAACGTGGTTGAAGGATTTGGTGTATGTAAAGTGATACTGTCTGATAACCCGAATTTCAAGCCCGGCGACCTCATTTCGGGATTTACTGGGTGGGAGGAATATAGTGTCATCCACAAAACAGAGCAGTTGAGAAAGATTCACCCTGATGATCACATCCCTCTCTCCTTCCATCTCGGTCTTCTAGGAATGCCGGGTTTTACTGCTTATGCGGGATTTTTTGAGGTCTGCTCCCCAAGCAAAGGAGAATATGTTTTTGTCTCTGCAGCATCGGGTGCTGTGGGTCAACTTGTTGGTCAACTTGCCAAGTTGCATGGCTGCTATGTAGTTGGTAGTGCTGGCTCAAAGGAAAAGGTCCGCATTGACATCTACTTCGACAATGTGGGAGGGGACATGCTNGATGCTGCCCTCCTCAACATGAGNGTTCATGGTAGGATTGCAGTTTGTGGAATGGTGTCTCAGCAAAGCCTTTCTGATCCCAAAGGGATTCACAATTTATACAGTATCATTTCAAAGCGCGTCAGAGTGCAGGGTTTTCTGCAAAGTGATTACTTGCACTTGTACCCACAATTTTTGGAACATGTTTCGAGTCACTACAAGCAGGGGAAGATTGTGTACATTGAGGACATGAATGAAGGCTTGGAGAGTGCTGCAGCTGCTTTTGTTGGGCTTTTCCTTGGCAAGAACGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00362	157327	160031	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000362s00017680.1	PF00107.21	ADH_zinc_N	196	269	7.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.330
SRR1783600	control	43.864
SRR1783602	moderate drought stress	17.830
SRR1811619	moderate drought stress	18.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.914
DRR006520	Root Summer glycyrrhizin high producing strain	42.702
DRR006521	Root Winter glycyrrhizin high producing strain	34.432
DRR006522	Root Winter glycyrrhizin high producing strain	33.043
DRR006523	Root Summer glycyrrhizin low producing strain	15.962
DRR006524	Root Summer glycyrrhizin low producing strain	16.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.241
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.117
SRR2868004	Drought Stress (root)	24.774
SRR2967015	Control (root)	24.626

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.613
SRR9715740	Leaf	23.290
SRR9715741	Leaf	29.264
SRR9715739	Root	23.777
SRR9715742	Root	32.865
SRR9715743	Root	32.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.108
SRR8749028	MeJA induced 9h	17.811
SRR8749029	MeJA induced 9h	15.148
SRR8749030	Uninduced	33.184
SRR8749031	Uninduced	15.358
SRR8749032	Uninduced	20.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.114
SRR8400027	Control - Root	22.728