Gene detail

Gene detail information of Glyur000362s00017679

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02530.1	0	TCP-1/cpn60 chaperonin family protein
NR	KEH21487.1	0	TCP-1/cpn60 chaperonin family protein [Medicago truncatula]
COG	YP_004780226.1	5.00E-88	thermosome [Pyrolobus fumarii 1A]
Swissprot	tr\|Q9M888\|TCPZA_ARATH	0	T-complex protein 1 subunit zeta 1 {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|A0A072TVM3\|A0A072TVM3_MEDTR	0	TCP-1/cpn60 chaperonin family protein {ECO:0000313\|EMBL:KEH21487.1}

Sequence

Transcript Sequence

>Glyur000362s00017679.1
ATGTCTCTGCGAGTGCTGAACCCTAATGCCGAAGTTCTGAACAAATCTGCGGCACTTCACATGAACATCAATGCCGCTAAGGGCTTGCAGGATGTCCTCAAAACCAACCTTGGCTCGTTGGTGGCGCTGCAAATCCAGAACCCGACGGCTATTATGATTGCTAGGACGGCGGTGGCACAGGATGACATNAGTGGAGATGGCACCACTTCTACTGTGCTCTTCATTGGTGAACTTATGAAACAATCCGAGCGTTACATTGATGAAGGTATGCATCCACGTGTATTGGTTGATGGTTTTGAAATTGCAAAGAGGGCTACTCTGCAATTTCTTGAGAAGTTTAAGACTCCTGTTGTGATGGGTGATGAGCCTGACAAAGAGATTCTCAAGATGGTAGCAAGAACAACCCTGAGGACAAAGTTGTATGAGGCACTTGCTGATCAATTGACTGATATAATTGTTAATGCGGTTTTATGCATCCGAAAACCCGAGGAAGCAATTGATCTGTTTATGGTGGAGATTATGCACATGAGGCACAAGTTTGANGTTGACACACGCTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTCGGCACCCTGACNTGAAACGACGTGCAGAGAACTGCTATATCTTGACATGCAATGTATCTTTAGAATACGAAAAGAGTGAAATAAATTCAGGCTTTTTCTACTCAAATGCTGAACAGAGAGAGGTTATGGTTGCAGCTGAAAGGCGTCAGGTTGATGAAAAAGTTAGAAAAATTGTTGAACTGAAAAGAAAGGTTTGTTCTGGTAATGATAGCAATTTTGTCGTCATCAACCAAAAAGGAATTGATCCCCAATCACTGGACCTGCTTGCAAGGGAAGGAATAATTGCCCTTCGCAGAGCAAAGAGGAGAAACATGGAAAGATTGGTTTTGGCCTGTGGAGGAGAGGCAGTAAACTCTGTAGATGATTTGACTCCTGAATGTCTGGGTTGGGCAGGATTGGTATATGAGCATGTCCTTGGTGAAGAGAAATATACATTTGTGGAAAATGTTAAAAATCCCTTTTCTTGCACAATCTTGATAAAAGGTCCTAATGACCACACAATAGCTCAAATTAAAGATGCCGTCCGTGATGGTTTGAGGGCAGTAAAGAATACTATTGAAGATGAATCTGTTGTCTTGGGGGCTGGTGCATTTGAAGTTGCTGCTAGACAATATCTGATGAACGAAGTCAAGAAAACAGTTCAAGGGCGTGCACAACTGGGTGTTGAGGCTTTTGCCGATGCTCTTCTTGTGGTGCCCAAGACACTTGCTGAAAACTCTGGGCTTGACACTCAAGATGTGATTATTGCCCTTACGGGAGAGCATGATAGAGGAAATATTGTGGGATTGAACCAAAACACTGGAGAACCTATAGACCCTCAAATGGAGGGTATTTTTGACAACTATGCTGTGAAGCGCCAAATCATAAACTCAGGGCCAGTTATAGCATCTCAATTGCTATTGGTGGATGAAGTAATTCGTGCTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00362	146285	153621	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000362s00017679.1	PF00118.19	Cpn60_TCP1	42	504	1.00E-134
Glyur000362s00017679.2	PF00118.19	Cpn60_TCP1	42	487	1.30E-129

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.295
SRR1783600	control	14.943
SRR1783602	moderate drought stress	13.008
SRR1811619	moderate drought stress	12.751

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.851
DRR006520	Root Summer glycyrrhizin high producing strain	27.363
DRR006521	Root Winter glycyrrhizin high producing strain	16.452
DRR006522	Root Winter glycyrrhizin high producing strain	15.983
DRR006523	Root Summer glycyrrhizin low producing strain	20.628
DRR006524	Root Summer glycyrrhizin low producing strain	20.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.004
SRR2868004	Drought Stress (root)	33.466
SRR2967015	Control (root)	33.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.153
SRR9715740	Leaf	11.122
SRR9715741	Leaf	6.895
SRR9715739	Root	6.023
SRR9715742	Root	16.837
SRR9715743	Root	15.788

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.717
SRR8749028	MeJA induced 9h	34.809
SRR8749029	MeJA induced 9h	28.174
SRR8749030	Uninduced	6.009
SRR8749031	Uninduced	2.529
SRR8749032	Uninduced	3.512

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.345
SRR8400027	Control - Root	30.369