Gene detail

Gene detail information of Glyur000362s00017671

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07910.1	1.00E-72	Leucine-rich repeat (LRR) family protein
NR	AFK34885.1	2.21E-132	unknown [Medicago truncatula]
COG	YP_005057503.1	7.00E-21	hypothetical protein [Granulicella mallensis MP5ACTX8]
Swissprot	tr\|B9F655\|PIRL7_ORYSJ	5.00E-91	Plant intracellular Ras-group-related LRR protein 7
trEMBL	tr\|I3S3P3\|I3S3P3_MEDTR	8.00E-133	Uncharacterized protein {ECO:0000313\|EMBL:AFK34885.1}

Sequence

Transcript Sequence

>Glyur000362s00017671.1
ATGAAGCGTAATAATAGAAATGGAACAAGCAACCTTTTTACCTCTGTGTTGCTGGCTTTCTGCGGTGAGAGAACAGGGAACGTGCTTGAGCAAGTGAAGAACCCCAACACTGTGTTTGTCTTCAAGTTCAGACTCAGAACCCATTTTGGAGGTGGCAAGTCCACTGGTTTTGTTTTGATTTATGATTTTGTTGAGAACGCAAAGAAGCACGAGCCCTTCGTTAGAATAACCTTGCTGTATTACAGGCTTATCAGGTCATTTCCAGATGAAGTTCTTGATTTAGACAGATCTGTGCGCACTCTTGACTTAACACATAATCGAATAGTTGACATTCCTGTGGAAATTAGCAAATTGATTAATGTGCAGCGCCTGGTATTAGCGCACAACCTCATTGACAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTTAAACTTTTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACTATTGGCAGTTTGAGAAATCTGTTGCTTTTAAACGTGTCAAATAACCAGTTAAAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTCAGTGTGCAATCTCTCTCACTTGAAGTCACTTTGCTTAGATAACAATAATGTGAAGCAGATACCTCCGAATCTATTGAAGGACTGCAAAGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGATGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAATTTGACAAACAAATTGAATCAAATGTGATGATCAGTTCCAAAGGTCTCGATGAGGGTGTCGATCTGTAAAATCAGTCTCAGGCTTTTGGGGACCAATTGTGATGGGGATTTTCGGTGGTATATTTGGATGAACTTTTGATGTAGCATAGAATACAGGGTATTTTATCCATGCCTTTTTATTTCACATCTGAAATTAGTGTATATAGATCCCTGTGTCACATTGTGTATGATTCCTACATCTTTTTTTCTCCCTACCCAAGTTTGCATGCAAATATGTTTGATCATAGATGGAGCCAATGTCCAGGAATAATATAAAGATTTCATTTCATATACAGGATTTGAAGCCATTTTGTTGATAATGAAAAGGGGGTATGTATTTTGGCAGCTGTAAATTAAAACCGCTTTTGATGTAATATGGAAGGCACTACTGCATTCTTGGCCCCTTAATTATGTTGAGTGAAATAGGATGCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00362	58156	67098	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0000166 nucleotide binding

GO:0003735 structural constituent of ribosome

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000362s00017671.1	PF01282.14	Ribosomal_S24e	34	75	4.50E-10
Glyur000362s00017671.1	PF12799.2	LRR_4	97	135	4.00E-07
Glyur000362s00017671.1	PF12799.2	LRR_4	149	187	2.80E-08
Glyur000362s00017671.1	PF13855.1	LRR_8	195	253	9.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.699
SRR1783600	control	8.653
SRR1783602	moderate drought stress	9.767
SRR1811619	moderate drought stress	10.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.682
DRR006520	Root Summer glycyrrhizin high producing strain	15.423
DRR006521	Root Winter glycyrrhizin high producing strain	19.766
DRR006522	Root Winter glycyrrhizin high producing strain	19.827
DRR006523	Root Summer glycyrrhizin low producing strain	16.852
DRR006524	Root Summer glycyrrhizin low producing strain	18.585
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.482
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.721
SRR2868004	Drought Stress (root)	30.180
SRR2967015	Control (root)	28.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.861
SRR9715740	Leaf	24.022
SRR9715741	Leaf	17.749
SRR9715739	Root	3.395
SRR9715742	Root	8.209
SRR9715743	Root	6.865

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.576
SRR8749028	MeJA induced 9h	31.113
SRR8749029	MeJA induced 9h	35.249
SRR8749030	Uninduced	42.190
SRR8749031	Uninduced	43.529
SRR8749032	Uninduced	35.599

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.409
SRR8400027	Control - Root	28.661