Gene detail information of Glyur000362s00017669


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68590.12.00E-42Ribosomal protein PSRP-3/Ycf65
NRNP_001236243.11.04E-65uncharacterized protein LOC100306266 [Glycine max]
Swissprottr|P82412|RRP3_SPIOL1.00E-5430S ribosomal protein 3, chloroplastic (Precursor)
trEMBLtr|C6SYP6|C6SYP6_SOYBN4.00E-66Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G47990.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003625222253877-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000362s00017669.1PF04839.8PSRP-3_Ycf651281753.50E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.296
SRR1783600control17.329
SRR1783602moderate drought stress18.183
SRR1811619moderate drought stress18.018

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.412
DRR006520Root Summer glycyrrhizin high producing strain29.570
DRR006521Root Winter glycyrrhizin high producing strain10.996
DRR006522Root Winter glycyrrhizin high producing strain10.510
DRR006523Root Summer glycyrrhizin low producing strain24.644
DRR006524Root Summer glycyrrhizin low producing strain26.182
DRR006525Leaf Summer glycyrrhizin high producing strain216.497
DRR006526Leaf Summer glycyrrhizin high producing strain213.823

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)16.109
SRR2868004Drought Stress (root)13.255
SRR2967015Control (root)13.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf85.575
SRR9715740Leaf131.569
SRR9715741Leaf50.807
SRR9715739Root22.721
SRR9715742Root6.777
SRR9715743Root9.163

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.224
SRR8749028MeJA induced 9h15.985
SRR8749029MeJA induced 9h17.130
SRR8749030Uninduced6.400
SRR8749031Uninduced0.629
SRR8749032Uninduced5.172

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root22.156
SRR8400027Control - Root30.171

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved