Gene detail information of Glyur000362s00017668 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13340.1 | 1.00E-34 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | KHN17320.1 | 1.74E-169 | IST1-like protein [Glycine soja] |
| trEMBL | tr|I1N5C7|I1N5C7_SOYBN | 6.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00362 | 49474 | 51277 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000362s00017668.1 | PF03398.9 | Ist1 | 14 | 170 | 1.40E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.048 |
| SRR1783600 | control | 0.058 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.405 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.087 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.544 |
| SRR2868004 | Drought Stress (root) | 7.076 |
| SRR2967015 | Control (root) | 4.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.344 |
| SRR9715740 | Leaf | 1.167 |
| SRR9715741 | Leaf | 4.010 |
| SRR9715739 | Root | 0.025 |
| SRR9715742 | Root | 0.169 |
| SRR9715743 | Root | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.403 |
| SRR8749028 | MeJA induced 9h | 31.123 |
| SRR8749029 | MeJA induced 9h | 51.634 |
| SRR8749030 | Uninduced | 308.859 |
| SRR8749031 | Uninduced | 335.112 |
| SRR8749032 | Uninduced | 207.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.498 |
| SRR8400027 | Control - Root | 1.054 |