Gene detail

Gene detail information of Glyur000361s00013174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24830.1	3.00E-175	arginosuccinate synthase family
NR	XP_003602086.1	0	Argininosuccinate synthase [Medicago truncatula]
COG	YP_004173878.1	1.00E-157	argininosuccinate synthase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9SZX3\|ASSY_ARATH	0	Argininosuccinate synthase, chloroplastic (Precursor)
trEMBL	tr\|G7J524\|G7J524_MEDTR	0	Argininosuccinate synthase {ECO:0000313\|EMBL:AES72337.1}

Sequence

Transcript Sequence

>Glyur000361s00013174.1
GTTCACATTTAGTATCTGATTGTGTCTCGAACATCATGATTGATGATACAAGTGGGGAAAAAAATAATAATAATTGCAAGCTGACAGAAATTGAAACAGAGTAAGCACAATTAAACCGATTTAAAGGAAGGTGAGTGAGTAAGTGAGTGAGTGAGTGAAGTAGCTGCTATACAGCAAACATGGCGCCCTTAAATGCAGTTCTGACATACTCATCCCCCGTTATTGCTCCTACTCGACATGCAAGAGAGCAGCTACTGCATCACCAGTTCTGCAAGGCGAAGCCTGCATCATCATTCAAAGAGTTGGGGCCAAGGACAAGTGTTGTTGGTGCCACTAAACCGCAGGTTATAAAAGCAGTGCTGCAAGATGTAGAAATTTCTGAAGCCAAGATTACTGGGCTGCGTGGGAAATTAAATAAGGTTGTGCTGGCTTATAGTGGTGGCTTAGACACATCGGTTGTTGTCCCATGGTTGAGAGAGAATTACGGCTGTGATGTTGTTTGTTTCACTGCTGATCTTGGCCAAGGTGCACAAGAATTGGAAGGTTTAGAAGAGAAGGCCAAAGCCAGTGGGGCTTCCCAGTTAGTGGTGAAGGACTTGAAGGAGGAATTTGTCAGGGACTATGTATTCCCTTGCCTGCGTGCTGGTGCAATTTATGAGAGGAAGTATTTGCTTGGAACTGCAATAGCCCGCCCTATAATTGCAAAGGCCATGGTGGATATTGCCAAAGAAGTTGGAGCCGATGCTGTTCGGTTTGAGCTCTCTTTCTTTGCTCTGAATCCCAAGTTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTATGCTAAGAAACATAACGTGCCTGTTCCTGTAACCAAGAAATCCTTATATAGCAGGGACAGGAACCTTTGGCACATAACCCACGAGGGTGATGTTTTGGAAGACCCAGCAAATGAACCTAAAAAGGATATGTACATGATGTCTGCAGACCCAGAGGAGGCTCCAAATCAACCAGAATATGTGGAAATTGGGATAGAGTCAGGCATTCCTGTGTCAGTTAATGGGAAAAGACTTTCCCCTGGAAATTTGGTCTCTGAGCTCAATGAGATTGGTGGAAGGCATGGAATAGGCCGGGTTGACCTCGTTGAGGATCGCATTGTAGGCATGAAGAGCCGTGGAGTTTACGAAACTCCCGAAACGCTTCAGCTCAAGGACTCATTGGCCCTCAAATACGCAGAGATGGTGTATGCTGGGAGGTGGTTTGATCCACTCCGCGAGTCCATGGACGCGTTTATGGAGAAGATCACAGAGACCACAACAGGCTCAGTGACCTTGAAGCTGAAGAGCCCTTATAGCCTGTATAGGGAGGACATTTCCTCGTTTGAGAGTGGGGAGATGTATAACCATGCTGATGCTGTTGGCTTCATCAGGCTCTATGGTCTTCCAATGAGGATCAGAGCAATGATGCAACAGGGCATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00361	148675	152412	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01940	argG, ASS1	EC:6.3.4.5	Biosynthesis of amino acids	map01230
			Alanine, aspartate and glutamate metabolism	map00250
			Arginine biosynthesis	map00220
			Fluid shear stress and atherosclerosis	map05418

Gene Ontology

biological_process
GO:0006526 arginine biosynthetic process

molecular_function

GO:0004055 argininosuccinate synthase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000361s00013174.1	PF00764.14	Arginosuc_synth	82	345	5.30E-102

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1324.394
SRR1783600	control	1329.393
SRR1783602	moderate drought stress	1107.828
SRR1811619	moderate drought stress	1103.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1034.011
DRR006520	Root Summer glycyrrhizin high producing strain	1019.069
DRR006521	Root Winter glycyrrhizin high producing strain	0.352
DRR006522	Root Winter glycyrrhizin high producing strain	0.437
DRR006523	Root Summer glycyrrhizin low producing strain	328.149
DRR006524	Root Summer glycyrrhizin low producing strain	329.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	179.335
SRR2868004	Drought Stress (root)	347.251
SRR2967015	Control (root)	275.541

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.764
SRR9715740	Leaf	2.268
SRR9715741	Leaf	2.133
SRR9715739	Root	2633.051
SRR9715742	Root	1803.520
SRR9715743	Root	1971.431

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.181
SRR8749028	MeJA induced 9h	0.299
SRR8749029	MeJA induced 9h	0.107
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1271.710
SRR8400027	Control - Root	1949.265