Gene detail

Gene detail information of Glyur000361s00013171

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63420.1	0	RNA-metabolising metallo-beta-lactamase family protein
NR	AES72341.2	0	RNA-metabolising metallo-beta-lactamase [Medicago truncatula]
COG	YP_005268665.1	9.00E-105	ribonuclease J [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q9LU92\|TGT4_ARATH	1.00E-07	Trihelix transcription factor GT-4
trEMBL	tr\|G7J5I7\|G7J5I7_MEDTR	0	RNA-metabolising metallo-beta-lactamase {ECO:0000313\|EMBL:AES72341.2}

Sequence

Transcript Sequence

>Glyur000361s00013171.1
ATGGCTGCTCTTACCCCTCTCCCCCTCTCCCCTTACACCACCCTCTATCTCCGCTCCAAACCAACCAGGCTTTCCGTTTCTGTTTCCGCGCTCCCAGGCACTGATGGATCTAAATCGAAAGAACCTCGAAAGAGAAGGAGAAGAATAGAAGGTCCACGAAAAAGCATGGAAGACTCAGTTCAACGCAAGATGGAGCAATTTTACGAAGGTTCCGATGGGCCACCCTTACGTGTTCTCCCTATTGGTGGTTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGACCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCTGACTATGATGAACTTGGAGTCCAAAAGATCATACCCGATACAACGTTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATTACACATGGTCANGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACTCCAATTTTTGCATCTTCTTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTCTTACATCTAGACTCAAAATATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTCGAGATAGAACCTATAAGGGTGACCCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGACGAGACACCACTTGATGGGAAAGTTTTTGATCGCGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCGCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATCGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGATGCAGCTTGGAGGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCTAAGGATCTGCTTATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTATGGAAGTAGCCATGCTTTCAAACTAACCAAGGAAGATGTTGTTCTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGCAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAAAAATGAAAGTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCTATACATGGAGAACTCTTGTTTCTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATACGGCATACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCGCATTTGAGAAATAGAAGAGTCCTTTCCAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTCGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATTAGCATGGAAATATTTCGCCCTAAAAATTTAGAGAGTTTAGCTGAAAGCTCCTTNAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTAGATGCACTTTATAAAGCTGCTCATGCAGCTCTTTCAAGCTGTCCTGTTAACAGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAAGCCCATGTGGGTCCTGGAATATCAACATTAAGAAAAGTAGTGGATGGACATAGAAAGGAAAATCAGTCGCCCGCATTGCAAATAAGAGATGATGGCATTGATATTGAAGGACTATTACCCGAGGAAGACACCACTACACGTGGAGCTGAGGGTGATTTATCTGGTTCTGAGGATTCTGAAGAATTTTGGAAACCATTCATTGCATCATCTGTTGAGAAGTCNATCAAAGCTAACAATGGCCATGTTTCACAAAAGGAGCACAAGTCCACTCTGAAGAAAGATGATTCTGAAAATATTGATGAAGCCAAGTCTGAAGAAACATCTAATTCTGAATCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGATTTGCGAAGTGAACTACATGACAGATTTAAAGTTGTGAAAGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCCGATGGGGTCAGCAGAAGTCCTGGACAATGCAAATCTCTGTGGACATCTTTGGTACAGAAATATGAGGAGATCGAAAATGGGAAGGACAAGAAGAAAAGTTGGCAATATCTTGAGGACATGAGAAGGATAATGTCTAACGACGAAGCAGCGGCAACAAAGTGATTGGAAATGTGGTGGACAGGATAAGAAATATTCTGGTTAGCTTTTTACATTAAAATTGATCACAAGTCTGAGCATGGTGACCGGGAAGATAATCCATCAGTTGCATGATTCTTGTAACATGGACTCGTGACATTGAAGATCTATAAGTTTTTTGAGGGCTTAGGGGATAGGCAACATAATAGGGATTGGCTTTTATACTAACACAAGCTAATGACGAAAAGTTTCTATCTGGGTTTAGGGGACAATTTATTCCCCACTTCAAATACCCGCCCCTTTTTTTGTTTCTTGTCTAATATGTGTGCCATAATTGATTTTATCATTTTTGTTGGTGGCACATTTTGAGTGCCATATGCAACCATGGAAATGTCTTCTGCGTTTTGGCCACAAATTAACAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00361	132859	141000	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003723 RNA binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000361s00013171.1	PF00753.22	Lactamase_B	85	245	7.80E-18
Glyur000361s00013171.1	PF07521.7	RMMBL	431	462	1.90E-09
Glyur000361s00013171.1	PF13837.1	Myb_DNA-bind_4	771	855	2.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.338
SRR1783600	control	4.282
SRR1783602	moderate drought stress	5.590
SRR1811619	moderate drought stress	5.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.814
DRR006520	Root Summer glycyrrhizin high producing strain	5.922
DRR006521	Root Winter glycyrrhizin high producing strain	7.280
DRR006522	Root Winter glycyrrhizin high producing strain	6.968
DRR006523	Root Summer glycyrrhizin low producing strain	9.718
DRR006524	Root Summer glycyrrhizin low producing strain	9.569
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.179

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.034
SRR2868004	Drought Stress (root)	5.296
SRR2967015	Control (root)	6.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.326
SRR9715740	Leaf	28.978
SRR9715741	Leaf	12.343
SRR9715739	Root	0.192
SRR9715742	Root	2.225
SRR9715743	Root	2.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.382
SRR8749028	MeJA induced 9h	8.463
SRR8749029	MeJA induced 9h	3.946
SRR8749030	Uninduced	3.592
SRR8749031	Uninduced	1.638
SRR8749032	Uninduced	0.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.223
SRR8400027	Control - Root	5.079