Gene detail information of Glyur000361s00013170 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76650.3 | 3.00E-20 | calmodulin-like 38 |
| NR | XP_003602094.1 | 1.89E-71 | Calmodulin-like protein [Medicago truncatula] |
| COG | YP_001866396.1 | 4.00E-08 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 7.00E-35 | Putative calcium-binding protein CML19 |
| trEMBL | tr|G7J5J1|G7J5J1_MEDTR | 7.00E-72 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES72345.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 128447 | 128875 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013170.1 | PF13499.1 | EF-hand_7 | 12 | 68 | 7.90E-08 |
| Glyur000361s00013170.1 | PF13499.1 | EF-hand_7 | 81 | 141 | 3.40E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.255 |
| SRR1783600 | control | 0.171 |
| SRR1783602 | moderate drought stress | 0.202 |
| SRR1811619 | moderate drought stress | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 108.738 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 107.581 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.152 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 390.570 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 394.849 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.674 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.551 |
| SRR2868004 | Drought Stress (root) | 30.763 |
| SRR2967015 | Control (root) | 125.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 275.375 |
| SRR9715740 | Leaf | 133.138 |
| SRR9715741 | Leaf | 197.985 |
| SRR9715739 | Root | 108.795 |
| SRR9715742 | Root | 130.490 |
| SRR9715743 | Root | 147.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 208.923 |
| SRR8749028 | MeJA induced 9h | 463.333 |
| SRR8749029 | MeJA induced 9h | 446.637 |
| SRR8749030 | Uninduced | 324.477 |
| SRR8749031 | Uninduced | 337.000 |
| SRR8749032 | Uninduced | 229.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.609 |
| SRR8400027 | Control - Root | 15.125 |