Gene detail

Gene detail information of Glyur000361s00013167.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26340.1	2.00E-131	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NR	XP_003526966.1	0	PREDICTED: proteasome subunit beta type-5-like [Glycine max]
COG	YP_006924448.1	3.00E-36	proteasome endopeptidase complex [Methanolobus psychrophilus R15]
Swissprot	tr\|O24361\|PSB5_SPIOL	9.00E-168	Proteasome subunit beta type-5 (Precursor)
trEMBL	tr\|I1KC47\|I1KC47_SOYBN	0	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}

Sequence

Transcript Sequence

>Glyur000361s00013167.1
CACTTGCTCATAAAACACCATCGTTTCAGTTGGCAGAGCCCGGAGTCCTCACTCCTCAGTCACTCGCTGCCACCACACTGCCACAGATCCAGAGCGGTTCGTCGCGTTTATTTACCAGGTCACGAACCTGCAATCATGAAGCTTGATACCAGTGGTCTCGAATCGTTTCCTACACTGATTGCACCTGGAAACGACGTCGTTGGGGACTTCTCTGNCCCTCCATCATTCGAGCTTCCAAATTCCAAAGATTTCGNTGGCTTCCTTAAAGAAGCTATTCAGATGGTGAAGCCTGCAAAGGGTACTACAACTCTTGCTTTTATATTCAAGGAGGGTGTCATGGTAGCTGCCGATTCTCGAGCTAGCATGGGAGGATATATATCATCACAGTCTGTTAAGAAAATTATTGAAATCAATCCGTATATGCTCGGGACAATGGCTGGAGGTGCTGCTGATTGCCAATTTTGGCACAGAAATCTTGGGATCAAGTGTCGCTTGCATGAGTTGGCAAATAAAAGGAGAATCTCAGTAACAGGAGCCTCTAAGTTACTTGCAAATATTTTATACTCCTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGATGAGACGTGTAATTCACATGGTCCTGGTCTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTACAAATATGACATGTCAGTTGAGGAAGCNGCTGAACTGGCCCGGCGAGCAATTTATCATGCAACATTTCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTTTACCATGTGGGACCAAATGGATGGAAGAAATTGTCTGGTGATGATGTTGGGGAACTTCATTACCATTACTACCCAGTTACCCCAAGCACCGTGGAGCAAGAAATGGTTGAGGCAACTGGACCTTGATGGAGTAACACGTGAATATCTTTTCAAGTTTCCAATACTTGCCTGCTTATTTCAAATCAATTGCATGAAACTGATCATTTTATATTCGTAAACTGACATTAGTTTAATGTATACACAAGTGATGTCCTATGATGACTTGATGTGATGTTGAGTTTTGAGATCAAGTCAAATTTACCATCGGAGGGGACAGATCCATGTATAATATGGAATAGTTTAAATTGGAAAAGCACGTTTGACGTTTATTGCTAGGTAATGCTGATGTAATCCATCTTGCGATTTATGGTTTTCATGCCAACTTCTGAAAGTCACACAAGAAACTTGCTAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00361	102781	105860	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02737	PSMB5	EC:3.4.25.1	Proteasome	map03050

Gene Ontology

biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component
GO:0005839 proteasome core complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000361s00013167.1	PF00227.21	Proteasome	99	283	4.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.784
SRR1783600	control	46.290
SRR1783602	moderate drought stress	62.506
SRR1811619	moderate drought stress	63.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.144
DRR006520	Root Summer glycyrrhizin high producing strain	81.073
DRR006521	Root Winter glycyrrhizin high producing strain	70.122
DRR006522	Root Winter glycyrrhizin high producing strain	68.727
DRR006523	Root Summer glycyrrhizin low producing strain	69.133
DRR006524	Root Summer glycyrrhizin low producing strain	71.314
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.276
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.290
SRR2868004	Drought Stress (root)	91.538
SRR2967015	Control (root)	86.810

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.549
SRR9715740	Leaf	65.143
SRR9715741	Leaf	61.164
SRR9715739	Root	51.702
SRR9715742	Root	57.800
SRR9715743	Root	57.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.142
SRR8749028	MeJA induced 9h	59.678
SRR8749029	MeJA induced 9h	57.772
SRR8749030	Uninduced	21.434
SRR8749031	Uninduced	5.704
SRR8749032	Uninduced	11.971

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.425
SRR8400027	Control - Root	91.276