Gene detail information of Glyur000361s00013160 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22410.1 | 4.00E-104 | Class-II DAHP synthetase family protein |
| NR | KDO81019.1 | 3.31E-135 | hypothetical protein CISIN_1g0097281mg, partial [Citrus sinensis] |
| COG | NP_251533.1 | 2.00E-81 | aldolase [Pseudomonas aeruginosa PAO1] |
| Swissprot | tr|P27608|AROF_TOBAC | 1.00E-130 | Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor) |
| trEMBL | tr|A0A067GMZ6|A0A067GMZ6_CITSI | 1.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:KDO81019.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 47191 | 49113 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01626 | E2.5.1.54, aroF, aroG, aroH | EC:2.5.1.54 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 | |||
| Quorum sensing | map02024 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013160.1 | PF01474.11 | DAHP_synth_2 | 22 | 197 | 5.60E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.158 |
| SRR1783600 | control | 26.486 |
| SRR1783602 | moderate drought stress | 49.504 |
| SRR1811619 | moderate drought stress | 50.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.846 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.681 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.361 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.681 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.612 |
| SRR2868004 | Drought Stress (root) | 20.180 |
| SRR2967015 | Control (root) | 17.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.297 |
| SRR9715740 | Leaf | 2.776 |
| SRR9715741 | Leaf | 3.143 |
| SRR9715739 | Root | 6.895 |
| SRR9715742 | Root | 12.480 |
| SRR9715743 | Root | 11.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.084 |
| SRR8749028 | MeJA induced 9h | 26.068 |
| SRR8749029 | MeJA induced 9h | 15.154 |
| SRR8749030 | Uninduced | 68.038 |
| SRR8749031 | Uninduced | 47.068 |
| SRR8749032 | Uninduced | 28.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.297 |
| SRR8400027 | Control - Root | 25.947 |