Gene detail information of Glyur000361s00013159 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22410.1 | 4.00E-31 | Class-II DAHP synthetase family protein |
| NR | XP_009381500.1 | 8.00E-36 | PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Musa acuminata subsp. malaccensis] |
| COG | YP_006371723.1 | 9.00E-25 | phospho-2-dehydro-3-deoxyheptonate aldolase [Tistrella mobilis KA081020-065] |
| Swissprot | tr|Q75LR2|AROF_ORYSJ | 1.00E-35 | Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor) |
| trEMBL | tr|M0RMR2|M0RMR2_MUSAM | 1.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P30380_001} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 45541 | 45786 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01626 | E2.5.1.54, aroF, aroG, aroH | EC:2.5.1.54 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 | |||
| Quorum sensing | map02024 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013159.1 | PF01474.11 | DAHP_synth_2 | 1 | 70 | 6.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.700 |
| SRR1783600 | control | 11.106 |
| SRR1783602 | moderate drought stress | 20.980 |
| SRR1811619 | moderate drought stress | 18.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.558 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.118 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.347 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.349 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.756 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.881 |
| SRR2868004 | Drought Stress (root) | 28.952 |
| SRR2967015 | Control (root) | 21.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.823 |
| SRR9715740 | Leaf | 1.650 |
| SRR9715741 | Leaf | 2.153 |
| SRR9715739 | Root | 3.619 |
| SRR9715742 | Root | 14.562 |
| SRR9715743 | Root | 8.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.718 |
| SRR8749028 | MeJA induced 9h | 15.043 |
| SRR8749029 | MeJA induced 9h | 2.816 |
| SRR8749030 | Uninduced | 13.887 |
| SRR8749031 | Uninduced | 7.887 |
| SRR8749032 | Uninduced | 5.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.352 |
| SRR8400027 | Control - Root | 23.040 |