Gene detail information of Glyur000361s00013157 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39980.1 | 2.00E-27 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 |
| NR | KDO38075.1 | 5.05E-42 | hypothetical protein CISIN_1g043430mg, partial [Citrus sinensis] |
| COG | YP_003892456.1 | 4.00E-29 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase [Sulfurimonas autotrophica DSM 16294] |
| Swissprot | tr|P37216|AROG_SOLLC | 3.00E-41 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor) |
| trEMBL | tr|A0A067D942|A0A067D942_CITSI | 2.00E-42 | Uncharacterized protein {ECO:0000313|EMBL:KDO38075.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 43206 | 45368 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01626 | E2.5.1.54, aroF, aroG, aroH | EC:2.5.1.54 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 | |||
| Quorum sensing | map02024 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013157.1 | PF01474.11 | DAHP_synth_2 | 108 | 187 | 1.60E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.794 |
| SRR1783600 | control | 8.026 |
| SRR1783602 | moderate drought stress | 16.355 |
| SRR1811619 | moderate drought stress | 16.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.881 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.841 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.284 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.022 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.401 |
| SRR2868004 | Drought Stress (root) | 9.979 |
| SRR2967015 | Control (root) | 7.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.928 |
| SRR9715740 | Leaf | 0.900 |
| SRR9715741 | Leaf | 1.848 |
| SRR9715739 | Root | 1.584 |
| SRR9715742 | Root | 3.383 |
| SRR9715743 | Root | 4.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.932 |
| SRR8749028 | MeJA induced 9h | 7.620 |
| SRR8749029 | MeJA induced 9h | 1.840 |
| SRR8749030 | Uninduced | 4.129 |
| SRR8749031 | Uninduced | 2.505 |
| SRR8749032 | Uninduced | 1.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.324 |
| SRR8400027 | Control - Root | 6.874 |