Gene detail information of Glyur000361s00013156.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08980.5 | 2.00E-93 | F-BOX WITH WD-40 2 |
| NR | XP_007136267.1 | 0 | hypothetical protein PHAVU_009G032200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9ZPE4|FBW2_ARATH | 2.00E-121 | F-box protein FBW2 |
| trEMBL | tr|V7ARI4|V7ARI4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08262.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 38170 | 40801 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.891 |
| SRR1783600 | control | 30.340 |
| SRR1783602 | moderate drought stress | 43.558 |
| SRR1811619 | moderate drought stress | 43.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.298 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.886 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.685 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.989 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.870 |
| SRR2868004 | Drought Stress (root) | 21.229 |
| SRR2967015 | Control (root) | 21.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.476 |
| SRR9715740 | Leaf | 13.024 |
| SRR9715741 | Leaf | 12.661 |
| SRR9715739 | Root | 51.360 |
| SRR9715742 | Root | 29.917 |
| SRR9715743 | Root | 35.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.231 |
| SRR8749028 | MeJA induced 9h | 58.310 |
| SRR8749029 | MeJA induced 9h | 29.192 |
| SRR8749030 | Uninduced | 46.673 |
| SRR8749031 | Uninduced | 20.714 |
| SRR8749032 | Uninduced | 47.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.910 |
| SRR8400027 | Control - Root | 40.140 |