Gene detail information of Glyur000361s00013153 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78260.1 | 6.00E-41 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_007136265.1 | 3.92E-91 | hypothetical protein PHAVU_009G032000g [Phaseolus vulgaris] |
| COG | YP_003267833.1 | 1.00E-15 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9LKA4|UBA2C_ARATH | 3.00E-18 | UBP1-associated protein 2C |
| trEMBL | tr|V7ARR7|V7ARR7_PHAVU | 1.00E-91 | Uncharacterized protein {ECO:0000313|EMBL:ESW08259.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 11229 | 13461 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013153.1 | PF00076.17 | RRM_1 | 34 | 91 | 3.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.199 |
| SRR1783600 | control | 0.287 |
| SRR1783602 | moderate drought stress | 0.141 |
| SRR1811619 | moderate drought stress | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.235 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.028 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.912 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.443 |
| SRR2868004 | Drought Stress (root) | 17.477 |
| SRR2967015 | Control (root) | 11.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.578 |
| SRR9715740 | Leaf | 0.432 |
| SRR9715741 | Leaf | 0.367 |
| SRR9715739 | Root | 0.132 |
| SRR9715742 | Root | 1.003 |
| SRR9715743 | Root | 0.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.003 |
| SRR8749028 | MeJA induced 9h | 0.012 |
| SRR8749029 | MeJA induced 9h | 0.302 |
| SRR8749030 | Uninduced | 1.335 |
| SRR8749031 | Uninduced | 0.158 |
| SRR8749032 | Uninduced | 0.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.468 |
| SRR8400027 | Control - Root | 2.326 |