Gene detail

Gene detail information of Glyur000360s00014625

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G12250.1	beta-6 tubulin
NR	XP_007160057.1	hypothetical protein PHAVU_002G289100g [Phaseolus vulgaris]
Swissprot	tr\|P12459\|TBB1_SOYBN	Tubulin beta-1 chain
trEMBL	tr\|V7CT13\|V7CT13_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW32051.1}

Sequence

Transcript Sequence

>Glyur000360s00014625.1
ATGAGAGAGATCCTTCACGTTCAAGCAGGTCAATGTGGGAATCAAATTGGAGGCAAGTTTTGGGAGGTTATGTGTGATGAGCATGGGATAGATGCCACAGGAAGTTACGTAGGAAACTCCCACCTTCAAATTGAGAGGGTTAATGTGTACTACAATGAAGCAAGTGGTGGACGCTATGTTCCTAGAGCTGTGCTGATGGACCTTGAACCAGGCACCATGGACAGCTTGCGTTCTGGTCCTTATGGGAAGATATTTAGGCCTGATAACTTTGTGTTTGGACAGAATGGAGCTGGAAACAACTGGGCTAAAGGGCATTACACTGAAGGAGCAGAGCTTATTGATTCTGTTCTTGATGTCGTTCGTAAAGAAGCTGAGAACTGTGACTGCTTGCAAGAAGAGTATCCAGATAGGATGATGTTGACTTTCTCTGTGTTCCCTTCCCCTAAGGTCTCTGATACTGTGGTTGAACCCTACAACGCCACTCTATCCGTTCATCAGCTAGTTGAGAATGCGGATGAATGCATGGTCCTTGATAATGAGGCACTCTATGACATCTGTTTCCGAACACTCAAGCTCACAAATCCAAGTTTTGGTGATCTGAACCATTTGATCTCAACAACAATGAGTGGAGTAACATGTTGCCTCCGCTTTCCCGGTCAACTAAACTCAGATCTGCGCAAACTAGCAGTGAACCTCATCCCTTTCCCACGCCTTCACTTCTTCATGGTTGGTTTTGCACCCTTAACATCCCGTGGTTCCCAACAGTACAGTTCCCTCACAATCCCTGAACTCACACAACAAATGTGGGACGCAAGGAACATGATGTGTGCCGCAGACCCAAGACACGGTAGGTACCTAACAGCCTCAGCCATGTTCCGTGGCAAAATGAGCACAAAGGAAGTTGACCAACAGATGATAAACGTGCAGAACAAGAACTCTTCCTACTTTGTGGAGTGGATACCAAACAATGTGAAATCAAGTGTGTGTGACATTCCACCAACTGGCTTGTCCATGTCTTCCACCTTCATGGGGAACTCAACTTCCATTCAGGAGATGTTCCGGCGCGTCTCGGAGCAGTTCACGGTCATGTTCAAGAGGAAGGCTTTCTTGCATTGGTACACCGCGGAGGGGATGGATGAGATGGAGTTCACTGAGGCTGAGAGTAACATGAATGACTTGGTGGCTGAGTATCAACAGTATCAGGATGCTGCTGCTGCTATGGAAGAAGGGGAGATTGATGATGAAGAGGAGGATGAAGGCCTAGCTGCATGAGGGGGAAGGTCCCTTTTTGGGGTCATCATCATCAGTCATGGACTCATGGCATGGCAAACATATATCAAAACTCTGTGTGTGTGTGTGTACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00360	119569	122030	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000360s00014625.1	PF00091.20	Tubulin	3	131	3.60E-35
Glyur000360s00014625.1	PF03953.12	Tubulin_C	236	357	4.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.308
SRR1783600	control	13.347
SRR1783602	moderate drought stress	15.967
SRR1811619	moderate drought stress	15.952

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.208
DRR006520	Root Summer glycyrrhizin high producing strain	7.299
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.264
DRR006524	Root Summer glycyrrhizin low producing strain	1.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.260
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.064

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	123.033
SRR2868004	Drought Stress (root)	90.342
SRR2967015	Control (root)	78.100

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.621
SRR9715740	Leaf	1.920
SRR9715741	Leaf	1.847
SRR9715739	Root	5.717
SRR9715742	Root	33.725
SRR9715743	Root	29.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.210
SRR8749028	MeJA induced 9h	1.222
SRR8749029	MeJA induced 9h	0.506
SRR8749030	Uninduced	0.045
SRR8749031	Uninduced	0.551
SRR8749032	Uninduced	0.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	97.409
SRR8400027	Control - Root	152.037