Gene detail

Gene detail information of Glyur000360s00014606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63680.1	0	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases
NR	KEH21070.1	0	UDP-N-acetylmuramyl-tripeptide synthetase [Medicago truncatula]
COG	NP_389401.1	2.00E-90	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168]
trEMBL	tr\|A0A072U5D4\|A0A072U5D4_MEDTR	0	UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000313\|EMBL:KEH21070.1}

Sequence

Transcript Sequence

>Glyur000360s00014606.1
CCCAAACAAACCCCTCACTCACTCAGACACTCGCTCCTCTTTCCTAGTTTCCTTTCCTTTCACAATCCATTCAATTTGCACACTCNACTCGCATTCATACCCACCCAGTAGTAGTACACCAATATCTCTTGGATGGCTTTGCCTTCGCCATTTGTTACTCTTCCACGCTTTCTTTGTAATAACTGCCCCACTACAACAACAACTACATCCAACTCCATCACTGCAACAATAAAACCCCAACACCTTGCTCTTCCTTCTGCAACTGCACCTTTCTTCTGTCGTCCCTTACCTTATCCATTCGTTCGTCTCCGACCTCCCGGCGCTATCGGACCCGATGGCAAGTTCTATCCAAACCCGGCGGACGACGACCCACCGGAGGCGCCGGAGGATTCCGCCCACGGCTTCTCCAAGTTCCACCAAATCCAGCTCCAAGCCGAGCGCGCCCGAAAACTCCAGGAAGAAGACTTCAAGAACAACCAATCCACTTACCTAGCCGCCATCGCCGACGTCGAAGACGCACCCGAAATCGGTCCCTCTCTCGACGCCGCCGGTGAGGACGATCTCTTCGGCGAGATCGACANAGCCATCGCACTCAAGCGCAAGGAGTTCGTCAAGCAGGGCCTCCTCGACCCCAATCCCGGTAAACACGAAACCGCCGAGGTCGTCGCCGCCCCCGCCGACGAGCTTCAACCCGACGAGGTCGCCGACGTTGAGGAAATCGAACGGCTCCGGGGACTCGCCGTGGATTCCGACGAATTGCCGGCGGGGGATTTCCCCGGCGAAGATTTGAAATCGGAGTCTCCGTTTGAGTTGGATTTTGAGAGTTACGGAAAGGGAAAAGCTAGGATAGTGGAACCTAAGTTTAAGATGAGTTTGGCTGAGCTTTTGGATGAGAGCAAAGTGGTGCCTGTTTCTGTGTATGGTAATTTGGAGGTTGAAATCACTGGAATTCAACACGATTCAAGGCTTGTCACTTCTGGGAATTTGTTTGTGTGCTGTGTTGGGAGAAAAAACGATGGGCACATGTTCTTGAGTGAGGCTGATAAGAGAGGAGCCGTTGCCGTTGTGGCGAGTAAAGAGATTGACATTGAGGATACATTGGGTTGTAAGGCTTTGGTGATTGTGGAAGATACCAATGCGGTTCTTCCCACATTGGCTGCTTCCTTTTATAGGTACCCTTCCAAAAACATGGCTGTTATTGGGATAGCAGGGACCTATGGCAAAACAACCACCACCTATTTGATAAAAAGCATGTATGAAGCAATGGGCATGCGCACCGGGATGTTCAACTCCATTGCTTCTTATATCCACGGGGATAATCAGTTGGAGTCGCCGTATGCGTCGCTGGATGCTGTTTTGGTCCAGAATTTGATGGCAAAGATGCTACACAATGGAACTGAGGCGGTGGTCGCAGAGGCTTCTTCTGATGGGCTGGCTAAGGGGAAGTATGATGAGGTTGATTTCGATATTGCGGTTTTTACTAATTTGGTTGAGGGGGAGGAGGCTGATAGAGATGCAAAGGCCAAGCTTTTCTCGAGGATGGTGGATCCTGAGAGGCATAGGAAGGTTGTGAACATCGATGATCCGAATGCGCCTTCCTTCGTTTCGATGGGGAGCCCTGAAGTTCCGGTTGTGACATTTGCGTTGGAGAATAAAGACGCAGATGTTCATCCCTTGAAGTTTCAGCTATCCCTGTTTGAGACACAGGTGTTGGTTAATACACCAACTGGGATACTAGAGATTTCTTCGGGTTTACTCGGGAGGCACAATGTTTACAACATTCTTGCTGCCGTGGCTGTTGGCATTGCTGTTGGGGCACCCTTAGAGGACATTGTTAGAGGGGTTGAAGAGGTTGATGCGGTTCCTGGGAGGTGTGAGTTAATTGATGAGGAACAAGCATTTGGGGTAATAGTGGACTATGCTCGTACTCCTGATGCCTTGTCTAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGATTATAACTGTGATCGGTTGCTGTGGTGAGGACGAAAGGGGGAAGAGACCCATGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGAATGAAGATCCATTGGATATTTTGGATGATATGTTGGCTGGGGTNGGATGGACAATGCAGGAGTACCTGAAATATGGAGAGAATGACTACTACCCTCCTCTTCCAAATGGTCATAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCCGTTGCAATGGGAGAGGAGGGTGATGTTATTGTCATTGCTGGCAAAGGCCATGAAACATATCACATAGAAGGTGAAAAGAAGGATTTCTTTGATGATCGAGAAGAGTGCCGGGAGGCATTGCAGTACGTTGACGAGCTTCACCAAGCTGGAATAGATACAAGTTACCAGAGAGCCACTGATACATTACCAAAGGCCGCTGTGATAACAACGTGATAACAATGGATCAGAGCAACACTTGTTTCCGTTGCTACACAAATCAAGCAAGTTAAGAGAAACGGGCCTTTCCGTGATTAGAGGGCCCTTTCTTTGGAGGAGCTTGAGAATCAACCAGGCTTTTCCGTTTGAACGGCAACGGTGAAAATTGCAACTTGGGCGCAGTACAGTTTCATCCAACCCTTTTTTTTGTCTATATGGTTCGTCATAATTTCTTTTTTCCATTTTTTTTTCCGGCCTCCATTGATTCCACTGTAATTCTATGCCCTTTAAACAANTGATTGAAGAGTGAGGCAAATGGCAATAGTCCAGCTTCCTCCTTGGCAAATATATATAATAATTAAACAGAAGTCCTGAATTGAACTCGTCCGACTAAGCTGGATATCCAACGCAAGGTATGATAAGACGTTAGTCTGGCATTCGTATGCAGCACCAAAACTATTGTGAGAACCAAACATGGCCCTTTTTTGGTGTATAATAATCATACGTGACTTGGTCCCAGTTTTCCTGGTCCACTAANGCCCAAATAGAAGATACACCAACTTCTACATTCGACGTGGCCCAATAAACGGCAGGACATAAAGCCCCTTATTTCTGTCTGCTCGTGAATTTCTCTCCAAACGTTCACCTATGAGGTAACGGCTCTAGCGAGATCATCTTCACCAACGTGTTCTCGGAGACCAGCTCACCTTAGAACCAAAAAAACCATTCCTGGTCATCCGCTTTTGTGCGAACATTTTGCGACTGAAATAAATAAATAAATAAAAAATCACATTTGTAGATTATCATACAAGGTGGCTGATCGATTAAGCACATGTACACATAACTTCTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00360	19863	24347	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008360 regulation of cell shape

GO:0009058 biosynthetic process

GO:0051301 cell division

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005524 ATP binding

GO:0016874 ligase activity

GO:0016881 acid-amino acid ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000360s00014606.1	PF01225.20	Mur_ligase	269	346	2.60E-12
Glyur000360s00014606.1	PF08245.7	Mur_ligase_M	358	556	2.40E-26
Glyur000360s00014606.1	PF02875.16	Mur_ligase_C	577	660	1.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.811
SRR1783600	control	9.824
SRR1783602	moderate drought stress	6.408
SRR1811619	moderate drought stress	6.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.854
DRR006520	Root Summer glycyrrhizin high producing strain	7.788
DRR006521	Root Winter glycyrrhizin high producing strain	5.288
DRR006522	Root Winter glycyrrhizin high producing strain	5.003
DRR006523	Root Summer glycyrrhizin low producing strain	6.923
DRR006524	Root Summer glycyrrhizin low producing strain	6.923
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.410

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.803
SRR2868004	Drought Stress (root)	7.142
SRR2967015	Control (root)	7.356

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.453
SRR9715740	Leaf	30.993
SRR9715741	Leaf	13.290
SRR9715739	Root	7.654
SRR9715742	Root	10.451
SRR9715743	Root	11.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.916
SRR8749028	MeJA induced 9h	7.516
SRR8749029	MeJA induced 9h	4.843
SRR8749030	Uninduced	1.530
SRR8749031	Uninduced	0.575
SRR8749032	Uninduced	0.888

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.951
SRR8400027	Control - Root	13.216