Gene detail

Gene detail information of Glyur000360s00014604

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00430.1	9.00E-143	plasma membrane intrinsic protein 1;4
NR	KEH21072.1	0	major intrinsic protein (MIP) family transporter [Medicago truncatula]
COG	YP_633223.1	1.00E-31	aquaporin Z [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q7XSQ9\|PIP12_ORYSJ	0	Probable aquaporin PIP1-2
trEMBL	tr\|A0A072TUG6\|A0A072TUG6_MEDTR	0	Major intrinsic protein (MIP) family transporter {ECO:0000313\|EMBL:KEH21072.1}

Sequence

Transcript Sequence

>Glyur000360s00014604.1
CTCTCTTTTCCATTTTCCTTTACAGTTTACAGATTTCTTAGTCCACTATATAATGAGACTCTTCTCAATCTAGCTGCTCATTGCATACATTTCTAAGAGACTGAGAGCAAAGAAAAGAGGGGTGCGATTGTTGTAGTTGTGAGTTGTGAGAAGAGTGAGGATGGAGAAGGAGGAAGATGTGAAGGTTGGAGCAAACAAGTTCACAGAGAGGCAACCANTGGGGACAGCAGCACAGAGTGACCACAAGGACTACAAGGAGGCACCACCAGCTCCACTTTTTGAGCCAGGGGAGCTAAAGTCATGGTCTTTCTACAGAGCTGGGATTGCTGAGTTCATGGCAACCTTCCTCTTCCTCTACATCACCATCTTAACTGTCATGGGTGTCAACAGGTCACCCTCCAAGTGTTCCTCTGTTGGCATTCAAGGCATTGCCTGGTCCTTTGGGGGTATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGGTGGACACATCAACCCAGCAGTGACCTTTGGTCTGTTTTTGGCAAGGAAGCTGTCCCTCACAAGAGCACTGTTCTATATTGTGATGCAGTGTCTTGGAGCCATATGTGGTGCTGGTGTGGTGAAGGGATTTGAGGGTAATGCTCGGTATGAGATGTTCAAAGGTGGAGCCAATTTTGTGAGTCCTGGATACACNAAGGGTGATGGCCTTGGTGCTGAGATCGTTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTTCCTATTTTGGCTCCCCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCCACAATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTCGGAGCTGCCATCATCTTCAACAGGGACCTTGCATGGGATGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCTGCACTTGCTGCTGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGGCTTGATTGAAGCTCTTATATCCTTCCCTTCCTTCCATCCATGCTTGTTTTGTATTATGTTGTAATCTTGTGATTTTGGGAGACAGACATTCATGTGAATCTTTTTATTTATTTATGTTAATCCATCGTATGGGTGTGTTAGTGTAAAGTATGACATAATTGTTTCTTTTATTTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00360	12084	14005	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000360s00014604.1	PF00230.15	MIP	44	274	4.00E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.639
SRR1783600	control	57.011
SRR1783602	moderate drought stress	31.767
SRR1811619	moderate drought stress	31.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	251.750
DRR006520	Root Summer glycyrrhizin high producing strain	248.760
DRR006521	Root Winter glycyrrhizin high producing strain	1.393
DRR006522	Root Winter glycyrrhizin high producing strain	1.272
DRR006523	Root Summer glycyrrhizin low producing strain	42.199
DRR006524	Root Summer glycyrrhizin low producing strain	41.895
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.821

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	512.515
SRR2868004	Drought Stress (root)	266.727
SRR2967015	Control (root)	312.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.178
SRR9715740	Leaf	10.660
SRR9715741	Leaf	30.820
SRR9715739	Root	174.500
SRR9715742	Root	64.459
SRR9715743	Root	88.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.153
SRR8749028	MeJA induced 9h	10.187
SRR8749029	MeJA induced 9h	21.372
SRR8749030	Uninduced	1.812
SRR8749031	Uninduced	2.438
SRR8749032	Uninduced	10.720

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	415.942
SRR8400027	Control - Root	529.977