Gene detail

Gene detail information of Glyur000359s00016727

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G07510.1	FTSH protease 10
NR	XP_004507174.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X1 [Cicer arietinum]
COG	YP_003120165.1	ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q8VZI8\|FTSHA_ARATH	ATP-dependent zinc metalloprotease FTSH 10, mitochondrial (Precursor)
trEMBL	tr\|I1LQN8\|I1LQN8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06530.1}

Sequence

Transcript Sequence

>Glyur000359s00016727.1
CCTTTGGTTTTACAAAATTGCTTGAGTGCCCTCTTCACTTCCGCCCTCTCCAACGACAACTCGCTCTTCCATCAGCGGCGTGGGTCCTCCGGCGGCTGTTGTCCTTTGTGTTGGGTCCTCGTGGTCGGAATGTGGGTCAACCTGTTGGTCGCCAAAGGTTTATCTTTCGCCGGTCTCAGTCGCGCACTGGTTTACTGCGGATGTCCAGCGCTCTCATCTCACTNCCCCCCTCTATCTCACTCACACATTCATCTCTTTCTCCGACTTTGCGTTTTCTATTCAGAGAGAGTATCTGAGGTGACGGTGCTGTCGACGATGCCAATTTCAGAGGGAATAAGAGTGGAGTTTGCCACCGCTCTCCTCAAGATTGTAACGAGGCCACTTGGGCTGGAGGCCAACTCAGATGGGGGTAACCAGCCACCTCATCCAACACCTGGATCAGGAAATTTTCTGCGAGGTGATGGGAGATTGGGAACCCTTTCGGGACCATTGCGAACGAATGTCTATTCCGACNGAGCGGAAGGGGGTTTAGGGTTTCTTAGGGGTTACGCATCTTCTACCAGAGCTTGCAGTAATGGCTTCATTTCCAATTTGCCTGATTTTAAATCTGTTGTTGCAAACCCTAGTCTTCGCCGCCTGTTTTCCAGCGAATCCCCGGAGAAGAAGAATTATGAGAACTATCATCCCCAGGAAAATAAGGAAAATCCAAAGGGAAATGAAGGAAATTCTAAAGATGGCTCAAATACAAACACAGATGATCCTAGAAATTTTCAAGAAGCTTTCATGAAACCACTACCATATATTATCGCTTTAGCGTTGATGATGACACTGTCTGTTACGTCCATAACTTTTCAATACACTAAGCTGTCCCAGATTAGCTTTAAGGAGTTTAANAAAAAGCTTTTGGAGCCAGGATTAGTAGACCATATAGTTGTCTCAAACAAATCAGTTGCCCAAATATATGTCAAGAGCACTCCGCATAATCAAACAGATGGTGAACTGGTCCAAGAAACACTCCATGCAGAGGGATCCGGAGGCCAATTTAAATATTTTTTCAATATTGGAAGTATTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCACAAGATGCACTAGGCATTGACCCTGACAATTACATACCTGTTACGTATTCTTCTGAAATGGTTTGGTACCTTGAATTGATGAGATTTGTGTACCAGGAATTGGTGAGATTTTCTCCAACACTATTGCTTTTGGGATCTCTCCTGTATTTTAAACGGAAAATGAAGGCTGAAGTTCATGTTGGTGGTAATAACGGTGGTGATAACAGTGATTTTAATAAAGCCAAATTTACTAAAGTAGACANAAATGCCAAAAACAAGGTTTATTTCAAAGATGTTGCTGGTTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAGCTTGGTGCAAAAATTCCGAAAGGTGCTCTTCTGTCTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTCCTTTCTATGTCTGGATCTGAGTTCAGGGAAATGTATGTTGGTGTTGGACCAGCTAGGGTGAGAGACCTGTTTCAGGAAGCAAGGAAGTGTGCTCCTAGTATAGTATTTATTGATGAGATTGATTCAATTGGTCGGGCAAGGGGGCGTTTCTCTCGTAACGATGAGGGTGTAAATACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTGCTAGCAGGAACAAATAGACCTAATATATTAGACAAAGCCCTTCTTAGGCCTGGGCGTCTTGATCGCCAGATAACAATTGATAAACCTGACATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAGAAGATTAAACTTGACCATGAGCCTTCATATTTTTNACAAAAGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCNAATGTGTGCAATGAAGCTGCTCTCTTTGCTGCAAGAGGTGAAGAAACACAAGTAATAAGCAAGGTGGAAAGGCGTACTGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCTGAGCCCTTGTTCAAAGTAACTATTGTTCCTCGTGGAACAGCAACTCTTGGGTTTGCCCAGTATGTTCCAAATGACAACCTTCTCATGACAAAGGAGCAGTTTTTTGATATGACTTGCATGATCCTTGGTGGTCGGGTTGCTGAGCAGGTTCTCATTGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGATGTATGACCAAGTAGCAGTCTATGGTTTCAGCGACAAAGTGGGGCCCCTCTCTTTTCCGGACTCGTTTGAGGACTCAAAACCATACAGCAGCACAACTGGTGCAATGATTGATAATGAAGTGCGAGAATGGGCGAAAAAAGCATATGAACGCACAGTACAGCTTATAGAGGAACACAAGGAGAAAGTAGCTCAAATTGCAGAGTTACTACTTGAAAAAGAGGTACTTCACCATGATGACTTGGTTAAAGTATTGGGTAAGCGACCCTTCAAGAGTAGTGAACCTACCAATTATGATAAATTTATGCAAGGCTTTCAAGAGGATGAGGAAAAAGTCACAGAAAGCACTGTCAATGGGCCAGAGGAGGGTGGAGGGTCTACTACACCTTTAGAGCCTCAGGATTTTTTGCGAAGTGATGGGAGATTGGGAACCCTTTCGGGAGCGCCACGAACGAATACGAATGTCTATTCCGACGGAGCCGAAGGGCAATTAGGGCTTCTCAGGGGATACGTATCTTCTGCAAGAGCTCCCAGTAATGGCTTCATTTCCAATTTGCCTGATTTTAAATCTGTTGCCGCAAACCCTAGGCTTTGCCGCCTGTTTTCCAGCGAATCCCCGAAGAAGAAGAATTATGAGAACTTTCAACCCAAGAAAAAGAAGGAAATACCAAAGGGAAAAGAAGGAAATTCTAAAGATGAGTCAAACACAAACTCAGATGATTCTGGAAATTTTAACGATGCTTTCATGAAACAATTACCAAATATGATCACTTTATCATTGATGATGACGCTGTTTGTTACGTCCTTTCCTTTTGGTCCTCGTGAGCAGCAGCAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTCGACCATATTGTTGTCTCAAACAAATCAGTTGCCAAAATATATGTAAGGAGCTCTCCACATAATCAAACAGACAGTGAAATGGTCCAAGGAACCCTCCCTGCAAAGGGATCTGGAGGCCAATATAAATATTTTTTCAATATTGGAAGTGTCGAGTCTTTTGAGGAGAAGTTAGAGGAAGCGCAAGAAGCACTAGGCATTGACCCTCACGATTATGTACCTGTTACGTATTCTTCCGAAATGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCCTGTATATGGGAAGGAGAATGCAGGGTGGACTTGGTGTTGGTGGTGGTGCTGGTGGTAAGGCTGGTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACTAAAGTAGACAAAAATGCCAAAAACAAGGTTTATTTCAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTTCTGGTTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAGTCTGGTGTGCCATTTCTTTCTATAGCTGGCTCTGATTTCATGGAAATGTTTGTCGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGGGCAAGGGGACGTGGAGGTTTCTCTGGTGCAAATGATGAGCGTGAAAGTACTTTAAATCAGTTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTGCTGGCAGGAACAAATAGACCAGATATATTAGACAAAGCCCTACTTAGGCCTGGACGTTTTGACCGCCAGATATCAATTGATAGACCTGACATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAGCCTTCATATTTTTCTCAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAGAAATAGTTGATCTTAGGTGGTGGTTGTAA

Protein Sequence

>Glyur000359s00016727.1
MWVNLLVAKGLSFAGLSRALVYCGCPALSSHXPPLSHSHIHLFLRLCVFYSERVSEVTVLSTMPISEGIRVEFATALLKIVTRPLGLEANSDGGNQPPHPTPGSGNFLRGDGRLGTLSGPLRTNVYSDXAEGGLGFLRGYASSTRACSNGFISNLPDFKSVVANPSLRRLFSSESPEKKNYENYHPQENKENPKGNEGNSKDGSNTNTDDPRNFQEAFMKPLPYIIALALMMTLSVTSITFQYTKLSQISFKEFXKKLLEPGLVDHIVVSNKSVAQIYVKSTPHNQTDGELVQETLHAEGSGGQFKYFFNIGSIESFEEKLEEAQDALGIDPDNYIPVTYSSEMVWYLELMRFVYQELVRFSPTLLLLGSLLYFKRKMKAEVHVGGNNGGDNSDFNKAKFTKVDXNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLSGPPGTGKTLLAKATAGESGVPFLSMSGSEFREMYVGVGPARVRDLFQEARKCAPSIVFIDEIDSIGRARGRFSRNDEGVNTLNQLLVEMDGFGTTAGVVVLAGTNRPNILDKALLRPGRLDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYFXQKLAALTPGFAGADIANVCNEAALFAARGEETQVISKVERRTVAYHESGHAVAGWFLEHAEPLFKVTIVPRGTATLGFAQYVPNDNLLMTKEQFFDMTCMILGGRVAEQVLIGRISTGAQNDLEKVTKMMYDQVAVYGFSDKVGPLSFPDSFEDSKPYSSTTGAMIDNEVREWAKKAYERTVQLIEEHKEKVAQIAELLLEKEVLHHDDLVKVLGKRPFKSSEPTNYDKFMQGFQEDEEKVTESTVNGPEEGGGSTTPLEPQDFLRSDGRLGTLSGAPRTNTNVYSDGAEGQLGLLRGYVSSARAPSNGFISNLPDFKSVAANPRLCRLFSSESPKKKNYENFQPKKKKEIPKGKEGNSKDESNTNSDDSGNFNDAFMKQLPNMITLSLMMTLFVTSFPFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRSSPHNQTDSEMVQGTLPAKGSGGQYKYFFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGGAGGKAGRGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSIAGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIDRPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAAREIVDLRWWL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	170083	182486	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016727.1	PF06480.10	FtsH_ext	227	334	5.50E-07
Glyur000359s00016727.1	PF00004.24	AAA	451	580	6.90E-40
Glyur000359s00016727.1	PF01434.13	Peptidase_M41	639	820	6.20E-61
Glyur000359s00016727.1	PF06480.10	FtsH_ext	997	1100	1.30E-09
Glyur000359s00016727.1	PF00004.24	AAA	1214	1346	1.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.234
SRR1783600	control	9.321
SRR1783602	moderate drought stress	7.602
SRR1811619	moderate drought stress	7.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.239
DRR006520	Root Summer glycyrrhizin high producing strain	10.369
DRR006521	Root Winter glycyrrhizin high producing strain	10.976
DRR006522	Root Winter glycyrrhizin high producing strain	10.539
DRR006523	Root Summer glycyrrhizin low producing strain	9.294
DRR006524	Root Summer glycyrrhizin low producing strain	9.324
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.790
SRR2868004	Drought Stress (root)	17.980
SRR2967015	Control (root)	17.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.382
SRR9715740	Leaf	10.947
SRR9715741	Leaf	11.282
SRR9715739	Root	2.480
SRR9715742	Root	15.275
SRR9715743	Root	9.565

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.274
SRR8749028	MeJA induced 9h	48.131
SRR8749029	MeJA induced 9h	19.849
SRR8749030	Uninduced	13.456
SRR8749031	Uninduced	23.160
SRR8749032	Uninduced	11.674

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.539
SRR8400027	Control - Root	18.220