Gene detail

Gene detail information of Glyur000359s00016726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29130.1	0	laccase 2
NR	XP_006592190.1	0	PREDICTED: laccase-2-like isoform X2 [Glycine max]
COG	YP_001424188.1	2.00E-23	copper resistance protein B [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|O81081\|LAC2_ARATH	0	Laccase-2 (Precursor)
trEMBL	tr\|I1LQN6\|I1LQN6_SOYBN	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur000359s00016726.1
GATTAATCCTCTTGTCTCTTAGACTCACTCGACCGTGGCAAGAGACACAATAATGTTGATGCAGANCAAAATGATTGCCAGTACTGTTCCTTCATCACCGGCACTTTTTGGAGCTTTTCTCTTTGCCACCACCTTCTTCTGGACCTTCCCTGAATTTGTTCTGGCTACATCACAGCATGAAAGCGTTACTAGGCACTACAATTTCGATATAAGGCTGGTAAATGTTACGAGGCTGTGCCACACAAAAAGCATGGTTACCGTGAACGGGAAGTTCCCTGGGCCTCGCATTGTTGCAAGAGAAGGGGACAGAATTTTGGTTAAGGTGGTTAACCATGTTCCGAACAATGTCACCCTGCACTGGCATGGAGTGAGACAGCTTCGGAGTGGATGGTCGGATGGTCCATCATACATAACTCAATGCCCCATCCAAACGGGGCAGAGTTATGTGTACAATTTCACCATTATTGGACAAAGAGGAACTCTCTTCTGGCATGCTCACTTCTCATGGTTAAGAGCTACTCTCTATGGACCTCTCATACTCCTCCCCAGGCGCAACGAATCTTACCCATTTGTTAAACCCTACAAGGAAGTCCCCATCCTCTTTGGTGAGTGGTGGAACGCTGATCCAGAGGCTGTTATTGCNCAAGCACTTCAGACAGGGGGTGGCCCAAATGTTTCTGATGCCTACACCATTAACGGCCTTCCTGGGCCCCTCTACAATTGCTCCAATAATGACACATTCCGATTGAAGGTGAAACCAGGGAAGACATATCTTCTTCGTTTGATCAATGCTGCACTCAACGACGAACTCTTTTTCAGCATAGCAAACCACACATTGATCACTGTTGAAGCAGATGCAACTTACGTGAAACCTTTCAAGTCTGAGATCATTATCATTGGGCCAGGACAAACCACAAACGTTCTACTAAAAACAAAACCAGAGTACCCAAATGCCACGTTCTTCATGCTAGCGAGGCCATATTTCANTGGGATGGGCACATTCGACAATTCCACAGTGGCNGGCATTTTGGAATACAAGAAACCACCTAGTTCCTCAACCACTCCGAAAAACCTTCCTACTCTGAAACCCTCGCTTCCGGCCATCAATGACACTTCCTTCGTTGCCAATTTCAGTAGCAAATTTCGCAGTTTAAACAGTGCCAAATACCCAGCAAATGTGCCTCAAACAATTGACAAGAGCTTTTTCTTCACGGTAGGCCTTGGAACAAGTCCATGCCCAAAAAACCAAACTTGTCAAGGGCCAAATAACAGTTCAAAATTTGCAGCTTCAATGAACAACATATCCTTTGCTCTGCCCTCCATAGCACTNCTCCAACAACATTTCTTTGGGCAGGCTAAAAAAGTTGTTTTCACAACGGACTTTCCAGTGGTACCCCTGAGGCCATTCAATTACACAGGGACTCCACCAAACAACACNATGGTCACTAATGGAACCAAGACAGTGGTGATACCATATAACACCAGAGTGCAGGTGGTATTGCAGGATACAAGCATTTTGGGAGCTGAGAGTCATCCCTTACATCTTCATGGCTTTAATTTCTATATTGTGGGTCAAGGTTTTGGGAACTTTAANGCTAGTAAAGACCNTTCAAAATTCAATCTTGTTGATCCCGTTGAAAGGAACACTGTTGCTGTTCCCTCTGGTGGTTGGGTGGCAATACGGTTCCTCGCTGACAACCCAGGTGTTTGGCTGATGCATTGTCACTTCGATGTCCACCTGAGTTGGGGATTGAGGATGGCTTGGATTGTTGAGGATGGGAAACTCCCTAATCAGAAATTGCCTCCTCCGCCGCATGATCTCCCCAAAGTACTCACTCACCGTAAACACAATATATTGGTGCAGAACAAAATGATTGCTACTAATCCTTCATCACCGGCACATCTTGTGGCTTTCCTCTTTGCCACTAGCTTCCTCTTGAACCTTCCTTATGAAGGTGTTCTCGCCACTTCACATCATGGAAGCGTTACAAGGCACTACAAGTTCCATATAAGGCTGGTAAATGTTACGAGGCTGTGCCACACAAAAAGCATGGTTACCGTGAACGGGAAGTTCCCTGGGCCTCGCGTTGTTGCAAGAGAAGGGGACAGAATTTTGGTTAAGGTTGTTAATCATGTTCCAAACAATGTCACCCTGCACTGGCATGGAGTGAGACAGCTTCAGAGTGGATGGTCGGATGGAACTCTCTTCTGGCATGCTCACATCTCATGGTTAAGAGCTACTCTCTATGGACCTCTCATTCTCCTTCCAAGGCANAATGAATCCTACCCATTTGTAAAACCCTACAAGGAAGTCCCCATCCTCTTTGGTGAGTGGTGGAACGCTGATCCAGAAGCTGTTATTGCACAAGCACTTCAGACAGGGGGTGGCCCAAATGTTTCTGATGCCTACACCATTAACGGACTTCCTGGGCCCCTCTACAATTGCTCCAATAACGACACATTCAAATTGAAGGTGAGACCAGGGAAGACATATCTTCTTCGTTTGATCAACGCTGCGCTCAATGACGAACTCTTCTTCAGCATAGCAAATCACACCTTGGTCATTGTTGAAGCCGATGCCTCGTATGTTAAACCTTTCAAGTCTGAGATCATCGTAATTGGGCCAGGACAAACCACAAACGTTCTGTTAAAGACAAAACCAGAGTACCCAAATGCCACATTCTTCATGCTAGCAAGGCCTTATTTCACCGGAATGGGCACATTCGATAATTCCACAGTGGCTGGCATTTTGGAGTACAAGAAACCTCCTAGTTCCTCGACCTCAACCATTCCGAAAAACCTTCCTATTCTGAAACCCTCACTTCCGGCCATCAATGACACTTCCACTGTTGCCAATTTCAGTAGCAAGTATCGCAGTTTGAACAGTGTCAAGTACCCTGCGAATGTGCCTCAAACTGTTGACAAGAGCTTTTTCTTCACGGTAGGTCTTGGAACAAGTCCATGCCCAAAAAACCAAACTTGTCAAGGGCCAAATAACAGTTCAAAGTTTGCAGCTTCAATGAATAACATATCCTTTGCTCTGCCCTCCATAGCACTCCTCCAACAACATTTCTTTGGGCAGGCTAATAATGGTATTTATACAACGGACTTCCCAGTGGAACCCCTTAGGCCATTCAATTACACAGGGATTCCACCAAACAACACTATGGTCGCTAATGGAACCAAGACAGTGGTGATACCATATAATACAAGAGTGCAGGTAATATTGCAGGACACAAGCATTTTGGGAGCTGAGAGTCATCCCTTGCATCTTCATGGCTTCAATTTCTATATTGTGGGTCAAGGTTTTGGGAACTTTAATGCTAGTAAAGACCCTACAAACTTCAATCTTGTTGATCCCATTGAAAGGAACACTGTTGCTGTTCCCTCTGGTGGTTGGGTGGCTATACGGTTCCTTGCTGACAACCCAGGTGTTTGGCTGATGCACTGCCACTTTGATGTCCACCTTAGCTGGGGATTGAGGATGGCTTGGATTGTTGAGGATGGGAAGCTCCCTNATCAGAAATTGCCCCCTCCACCAAAAGATCTCCCGAAGGCCTTG

Protein Sequence

>Glyur000359s00016726.1
MLMQXKMIASTVPSSPALFGAFLFATTFFWTFPEFVLATSQHESVTRHYNFDIRLVNVTRLCHTKSMVTVNGKFPGPRIVAREGDRILVKVVNHVPNNVTLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIIGQRGTLFWHAHFSWLRATLYGPLILLPRRNESYPFVKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGLPGPLYNCSNNDTFRLKVKPGKTYLLRLINAALNDELFFSIANHTLITVEADATYVKPFKSEIIIIGPGQTTNVLLKTKPEYPNATFFMLARPYFXGMGTFDNSTVAGILEYKKPPSSSTTPKNLPTLKPSLPAINDTSFVANFSSKFRSLNSAKYPANVPQTIDKSFFFTVGLGTSPCPKNQTCQGPNNSSKFAASMNNISFALPSIALLQQHFFGQAKKVVFTTDFPVVPLRPFNYTGTPPNNTMVTNGTKTVVIPYNTRVQVVLQDTSILGAESHPLHLHGFNFYIVGQGFGNFXASKDXSKFNLVDPVERNTVAVPSGGWVAIRFLADNPGVWLMHCHFDVHLSWGLRMAWIVEDGKLPNQKLPPPPHDLPKVLTHRKHNILVQNKMIATNPSSPAHLVAFLFATSFLLNLPYEGVLATSHHGSVTRHYKFHIRLVNVTRLCHTKSMVTVNGKFPGPRVVAREGDRILVKVVNHVPNNVTLHWHGVRQLQSGWSDGTLFWHAHISWLRATLYGPLILLPRXNESYPFVKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGLPGPLYNCSNNDTFKLKVRPGKTYLLRLINAALNDELFFSIANHTLVIVEADASYVKPFKSEIIVIGPGQTTNVLLKTKPEYPNATFFMLARPYFTGMGTFDNSTVAGILEYKKPPSSSTSTIPKNLPILKPSLPAINDTSTVANFSSKYRSLNSVKYPANVPQTVDKSFFFTVGLGTSPCPKNQTCQGPNNSSKFAASMNNISFALPSIALLQQHFFGQANNGIYTTDFPVEPLRPFNYTGIPPNNTMVANGTKTVVIPYNTRVQVILQDTSILGAESHPLHLHGFNFYIVGQGFGNFNASKDPTNFNLVDPIERNTVAVPSGGWVAIRFLADNPGVWLMHCHFDVHLSWGLRMAWIVEDGKLPXQKLPPPPKDLPKAL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	148233	163694	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016726.1	PF07732.10	Cu-oxidase_3	55	166	3.70E-41
Glyur000359s00016726.1	PF00394.17	Cu-oxidase	179	330	1.00E-37
Glyur000359s00016726.1	PF07731.9	Cu-oxidase_2	457	576	8.90E-39
Glyur000359s00016726.1	PF07732.10	Cu-oxidase_3	655	717	1.20E-19
Glyur000359s00016726.1	PF00394.17	Cu-oxidase	753	904	7.80E-40
Glyur000359s00016726.1	PF07731.9	Cu-oxidase_2	1035	1152	2.20E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.705
SRR1783600	control	0.722
SRR1783602	moderate drought stress	0.725
SRR1811619	moderate drought stress	0.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.689
DRR006520	Root Summer glycyrrhizin high producing strain	7.684
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	13.792
DRR006524	Root Summer glycyrrhizin low producing strain	14.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.977
SRR2868004	Drought Stress (root)	2.425
SRR2967015	Control (root)	6.704

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.990
SRR9715740	Leaf	0.769
SRR9715741	Leaf	0.214
SRR9715739	Root	0.084
SRR9715742	Root	4.021
SRR9715743	Root	3.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.086
SRR8400027	Control - Root	1.957