Gene detail

Gene detail information of Glyur000359s00016721.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59550.1	1.00E-67	zinc finger (C3HC4-type RING finger) family protein
NR	XP_004507169.1	0	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]
Swissprot	tr\|P0CH30\|RING1_GOSHI	3.00E-37	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|G7JCE1\|G7JCE1_MEDTR	2.00E-180	Zinc finger (C3HC4-type RING finger) family protein {ECO:0000313\|EMBL:AES88902.1}

Sequence

Transcript Sequence

>Glyur000359s00016721.1
ATGAATTCGGATACGCAATCTGGAACGGCGTCGTATTGGTGCTACAGCTGCAACCGCTTCNTACACCTCTTGGAACACGGCAACATCGTGTGCCCTCACTGCGAAAGCGGTTTCGTCGAAGAGATCCACGCCGACCCATCGCCGCAACACCNTCTCAGTCCCTTCCCCGACGACCCCATCTCTTCAAGGAGGCAAGGGTTCCGCCGCAGACGCCGCGATGCCGGCAGCCGCTCCCCTTTCAACCCCGTCATCGTTCTCCGCGGAACCGGTGACGACGCCGCCGATCACGACGGAGGAAGCGCCTTCGAGTTGTTCTACGACGACGGCGACGGTTCCGGCCTCCGACCTCTTCCGCCGACGGTGTCGGAGTTCCTTTTGGGGTCGGGCTTCGATCGNTTGCTGGAGCAGTTCTCGCAGATCGAGTTGAACGGTTTTGGACGGCCGGAGAACCCGCCNGCGTCTAAGGCGGCGATCGAGTCGATGCCGACGGTTGAGATCGGCGAGGCGCAGGTGGGTGCCGACGAGCACTGTGCCGTTTGCAAAGAAGCGTTTGAGATGGGCGTGGAGGCACGTGAGCTACCCTGCAAGCACATCTACCATTCGGATTGCATTCTTCCATGGCTTTCGGTGCGGAACTCGTGCCCCGTGTGCCGCCACGAGCTTCCTTCGGATCACAGCCCGTTGGAAAACCGGGTATCGGGTCAAATCGACGAAGAAGCGATCGGGTTAACGATATGGAGGCTTCCCGGTGGTGGATTCGCCGTAGGGAGATTTTCCGGCGGAAGGAGAGCCGGCGAGAGCCACTTCCCGGTGGTGTACACGGAGATGGATGGAGGGCNCAATGCAAACGGGGCTCCCAGAAGAATTACTCGGACAGTGAGAAGCCACAGGGTTAGGGAAAGTCGTGGATTTGGGAGAGTTTTTCGCAATGTCTTGTCATTCTTCGGGAGACTTGGTTCTAGGTCCAATTCTTCTTCTTCTCGTTCATCTTCTCCCTCTTTATCGTCTTCGTATTCTGGTTCTGAGCATGTTTCTGTGAGTAGAAGAAACCCGCGGAGGCGAAACATGAATTTTGTCATAGAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	132888	133976	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016721.1	PF14369.1	zf-RING_3	11	42	2.10E-12
Glyur000359s00016721.1	PF13639.1	zf-RING_2	176	218	1.80E-13
Glyur000359s00016721.1	PF06547.7	DUF1117	240	354	3.70E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.900
SRR1783600	control	18.312
SRR1783602	moderate drought stress	15.753
SRR1811619	moderate drought stress	15.465

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	487.893
DRR006520	Root Summer glycyrrhizin high producing strain	486.041
DRR006521	Root Winter glycyrrhizin high producing strain	16.372
DRR006522	Root Winter glycyrrhizin high producing strain	12.666
DRR006523	Root Summer glycyrrhizin low producing strain	286.682
DRR006524	Root Summer glycyrrhizin low producing strain	396.717
DRR006525	Leaf Summer glycyrrhizin high producing strain	144.469
DRR006526	Leaf Summer glycyrrhizin high producing strain	141.939

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.378
SRR2868004	Drought Stress (root)	94.392
SRR2967015	Control (root)	563.827

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	511.743
SRR9715740	Leaf	599.313
SRR9715741	Leaf	409.883
SRR9715739	Root	2077.834
SRR9715742	Root	1382.021
SRR9715743	Root	1525.003

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	406.303
SRR8749028	MeJA induced 9h	392.095
SRR8749029	MeJA induced 9h	304.417
SRR8749030	Uninduced	124.291
SRR8749031	Uninduced	168.401
SRR8749032	Uninduced	220.757

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.266
SRR8400027	Control - Root	146.815